Using graph theory to analyze biological networks
Understanding complex systems often requires a bottom-up analysis towards a systems
biology approach. The need to investigate a system, not only as individual components but …
biology approach. The need to investigate a system, not only as individual components but …
The effects of non-synonymous single nucleotide polymorphisms (nsSNPs) on protein–protein interactions
CM Yates, MJE Sternberg - Journal of molecular biology, 2013 - Elsevier
Non-synonymous single nucleotide polymorphisms (nsSNPs) are single base changes
leading to a change to the amino acid sequence of the encoded protein. Many of these …
leading to a change to the amino acid sequence of the encoded protein. Many of these …
Measuring error rates in genomic perturbation screens: gold standards for human functional genomics
Technological advancement has opened the door to systematic genetics in mammalian
cells. Genome‐scale loss‐of‐function screens can assay fitness defects induced by partial …
cells. Genome‐scale loss‐of‐function screens can assay fitness defects induced by partial …
Computational methods for identifying similar diseases
L Cheng, H Zhao, P Wang, W Zhou, M Luo, T Li… - … Therapy-Nucleic Acids, 2019 - cell.com
Although our knowledge of human diseases has increased dramatically, the molecular
basis, phenotypic traits, and therapeutic targets of most diseases still remain unclear. An …
basis, phenotypic traits, and therapeutic targets of most diseases still remain unclear. An …
A comparison of multivariate genome-wide association methods
TE Galesloot, K Van Steen, LALM Kiemeney, LL Janss… - PloS one, 2014 - journals.plos.org
Joint association analysis of multiple traits in a genome-wide association study (GWAS), ie.
a multivariate GWAS, offers several advantages over analyzing each trait in a separate …
a multivariate GWAS, offers several advantages over analyzing each trait in a separate …
Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases
A Bauer-Mehren, M Bundschus, M Rautschka… - PloS one, 2011 - journals.plos.org
Background Scientists have been trying to understand the molecular mechanisms of
diseases to design preventive and therapeutic strategies for a long time. For some diseases …
diseases to design preventive and therapeutic strategies for a long time. For some diseases …
[HTML][HTML] The dynamics of signaling as a pharmacological target
M Behar, D Barken, SL Werner, A Hoffmann - Cell, 2013 - cell.com
Highly networked signaling hubs are often associated with disease, but targeting them
pharmacologically has largely been unsuccessful in the clinic because of their functional …
pharmacologically has largely been unsuccessful in the clinic because of their functional …
VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies
With the rapid accumulation of our knowledge on diseases, disease-related genes and drug
targets, network-based analysis plays an increasingly important role in systems biology …
targets, network-based analysis plays an increasingly important role in systems biology …
The UK Biobank: A shining example of genome-wide association study science with the power to detect the murky complications of real-world epidemiology
VY Tan, NJ Timpson - Annual review of genomics and human …, 2022 - annualreviews.org
Genome-wide association studies (GWASs) have successfully identified thousands of
genetic variants that are reliably associated with human traits. Although GWASs are …
genetic variants that are reliably associated with human traits. Although GWASs are …
Predicting disease associations via biological network analysis
Background Understanding the relationship between diseases based on the underlying
biological mechanisms is one of the greatest challenges in modern biology and medicine …
biological mechanisms is one of the greatest challenges in modern biology and medicine …