Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide
BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …
resolution and magnitude. They enable identification and relative quantification of …
Forgotten fungi—the gut mycobiome in human health and disease
The human body is home to a complex and diverse microbial ecosystem that plays a central
role in host health. This includes a diversity of fungal species that is collectively referred to …
role in host health. This includes a diversity of fungal species that is collectively referred to …
[HTML][HTML] GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies
Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition,
symbiotic associations with cultivated and wild plants and pathogenicity. The high …
symbiotic associations with cultivated and wild plants and pathogenicity. The high …
ITS 1 versus ITS 2 as DNA metabarcodes for fungi
R Blaalid, S Kumar, RH Nilsson… - Molecular ecology …, 2013 - Wiley Online Library
Abstract The nuclear ribosomal Internal Transcribed Spacer ITS region is widely used as a
DNA metabarcoding marker to characterize the diversity and composition of fungal …
DNA metabarcoding marker to characterize the diversity and composition of fungal …
[HTML][HTML] Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi)
F Badotti, FS de Oliveira, CF Garcia, ABM Vaz… - BMC microbiology, 2017 - Springer
Background Fungi are among the most abundant and diverse organisms on Earth. However,
a substantial amount of the species diversity, relationships, habitats, and life strategies of …
a substantial amount of the species diversity, relationships, habitats, and life strategies of …
Fungal identification biases in microbiome projects
L Tedersoo, B Lindahl - Environmental microbiology reports, 2016 - Wiley Online Library
Fungi are the key players in ecosystems as well as in plant and human health. High‐
throughput molecular identification of fungi has greatly progressed our understanding about …
throughput molecular identification of fungi has greatly progressed our understanding about …
[HTML][HTML] Evaluation of the ribosomal DNA internal transcribed spacer (ITS), specifically ITS1 and ITS2, for the analysis of fungal diversity by deep sequencing
RH Yang, JH Su, JJ Shang, YY Wu, Y Li, DP Bao… - PloS one, 2018 - journals.plos.org
The nuclear ribosomal DNA internal transcribed spacer (ITS) has been widely used to
assess the fungal composition in different environments by deep sequencing. To evaluate …
assess the fungal composition in different environments by deep sequencing. To evaluate …
Chronic nitrogen additions fundamentally restructure the soil fungal community in a temperate forest
Fungi dominate the microbial biomass of temperate forest soils and are a key driver of
ecosystem nutrient cycling. Chronic nitrogen (N) amendments frequently cause the …
ecosystem nutrient cycling. Chronic nitrogen (N) amendments frequently cause the …
[HTML][HTML] Progress and prospects of mycorrhizal fungal diversity in orchids
T Li, W Yang, S Wu, MA Selosse, J Gao - Frontiers in Plant Science, 2021 - frontiersin.org
Orchids form mycorrhizal symbioses with fungi in natural habitats that affect their seed
germination, protocorm growth, and adult nutrition. An increasing number of studies …
germination, protocorm growth, and adult nutrition. An increasing number of studies …
[HTML][HTML] Unravelling soil fungal communities from different Mediterranean land-use backgrounds
Background Fungi strongly influence ecosystem structure and functioning, playing a key role
in many ecological services as decomposers, plant mutualists and pathogens. The …
in many ecological services as decomposers, plant mutualists and pathogens. The …