RNA-Seq technology and its application in fish transcriptomics
X Qian, Y Ba, Q Zhuang, G Zhong - Omics: a journal of integrative …, 2014 - liebertpub.com
High-throughput sequencing technologies, also known as next-generation sequencing
(NGS) technologies, have revolutionized the way that genomic research is advancing. In …
(NGS) technologies, have revolutionized the way that genomic research is advancing. In …
Transcriptomics in aquaculture: current status and applications
S Chandhini, VJ Rejish Kumar - Reviews in Aquaculture, 2019 - Wiley Online Library
Transcriptomics is the analysis of total RNA transcript in a cell, which gives a broad idea of
cellular processes that are active and dormant. Recent advancement in next‐generation …
cellular processes that are active and dormant. Recent advancement in next‐generation …
The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts
Catfish represent 12% of teleost or 6.3% of all vertebrate species, and are of enormous
economic value. Here we report a high-quality reference genome sequence of channel …
economic value. Here we report a high-quality reference genome sequence of channel …
Transcriptome Analysis and SSR/SNP Markers Information of the Blunt Snout Bream (Megalobrama amblycephala)
Background Blunt snout bream (Megalobrama amblycephala) is an herbivorous freshwater
fish species native to China and has been recognized as a main aquaculture species in the …
fish species native to China and has been recognized as a main aquaculture species in the …
RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in …
The mucosal surfaces of fish (gill, skin, gastrointestinal tract) are important sites of bacterial
exposure and host defense mechanisms. In mammalian systems, the intestinal epithelium is …
exposure and host defense mechanisms. In mammalian systems, the intestinal epithelium is …
SNP marker diversity in common bean (Phaseolus vulgaris L.)
Single nucleotide polymorphism (SNP) markers have become a genetic technology of
choice because of their automation and high precision of allele calls. In this study, our goal …
choice because of their automation and high precision of allele calls. In this study, our goal …
A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance
Background Columnaris causes severe mortalities among many different wild and cultured
freshwater fish species, but understanding of host resistance is lacking. Catfish, the primary …
freshwater fish species, but understanding of host resistance is lacking. Catfish, the primary …
A comparison of brain gene expression levels in domesticated and wild animals
Domestication has led to similar changes in morphology and behavior in several animal
species, raising the question whether similarities between different domestication events …
species, raising the question whether similarities between different domestication events …
Current status of genome sequencing and its applications in aquaculture
Aquaculture is the fastest-growing food production sector in agriculture, with great potential
to meet projected protein needs of human beings. Aquaculture is facing several challenges …
to meet projected protein needs of human beings. Aquaculture is facing several challenges …
Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote
Background Upon the completion of whole genome sequencing, thorough genome
annotation that associates genome sequences with biological meanings is essential …
annotation that associates genome sequences with biological meanings is essential …