Practical considerations for plant phylogenomics
MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
ipyrad: Interactive assembly and analysis of RADseq datasets
DAR Eaton, I Overcast - Bioinformatics, 2020 - academic.oup.com
Abstract Summary ipyrad is a free and open source tool for assembling and analyzing
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
Human gut microbiota from autism spectrum disorder promote behavioral symptoms in mice
Autism spectrum disorder (ASD) manifests as alterations in complex human behaviors
including social communication and stereotypies. In addition to genetic risks, the gut …
including social communication and stereotypies. In addition to genetic risks, the gut …
Earth history and the passerine superradiation
Avian diversification has been influenced by global climate change, plate tectonic
movements, and mass extinction events. However, the impact of these factors on the …
movements, and mass extinction events. However, the impact of these factors on the …
Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary
Abstract The Cretaceous–Palaeogene (K–Pg) mass extinction is linked to the rapid
emergence of ecologically divergent higher taxa (for example, families and orders) across …
emergence of ecologically divergent higher taxa (for example, families and orders) across …
Tectonic collision and uplift of Wallacea triggered the global songbird radiation
Songbirds (oscine passerines) are the most species-rich and cosmopolitan bird group,
comprising almost half of global avian diversity. Songbirds originated in Australia, but the …
comprising almost half of global avian diversity. Songbirds originated in Australia, but the …
Taxonomic signatures of cause-specific mortality risk in human gut microbiome
A Salosensaari, V Laitinen, AS Havulinna… - Nature …, 2021 - nature.com
The collection of fecal material and developments in sequencing technologies have enabled
standardised and non-invasive gut microbiome profiling. Microbiome composition from …
standardised and non-invasive gut microbiome profiling. Microbiome composition from …
RAD cap: sequence capture of dual‐digest RAD seq libraries with identifiable duplicates and reduced missing data
Molecular ecologists seek to genotype hundreds to thousands of loci from hundreds to
thousands of individuals at minimal cost per sample. Current methods, such as restriction …
thousands of individuals at minimal cost per sample. Current methods, such as restriction …
High phylogenetic utility of an ultraconserved element probe set designed for Arachnida
Arachnida is an ancient, diverse and ecologically important animal group that contains a
number of species of interest for medical, agricultural and engineering applications. Despite …
number of species of interest for medical, agricultural and engineering applications. Despite …
Investigating difficult nodes in the placental mammal tree with expanded taxon sampling and thousands of ultraconserved elements
The phylogeny of eutherian mammals contains some of the most recalcitrant nodes in the
tetrapod tree of life. We combined comprehensive taxon and character sampling to explore …
tetrapod tree of life. We combined comprehensive taxon and character sampling to explore …