Introduction: The study of microbial communities based on the combined analysis of
genomic and proteomic data–called metaproteogenomics–has gained increased research …

Mass spectrometry–based proteomics has emerged as the leading method for detection,
quantification, and characterization of proteins. Nearly all proteomic workflows rely on …

Abstract Background The NCBI BLAST suite has become ubiquitous in modern molecular
biology and is used for small tasks such as checking capillary sequencing results of single …

Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

Metabolomics is a key approach in modern functional genomics and systems biology. Due
to the complexity of metabolomics data, the variety of experimental designs, and the …

To the Editor: Improvements in next-generation proteomics, including instrumentation1, 2,
sample preparation, and computational analysis3, 4, have generated large amounts of data …

Metaproteomic research involves various computational challenges during the identification
of fragmentation spectra acquired from the proteome of a complex microbiome. These …

Ocean metaproteomics is an emerging field enabling discoveries about marine microbial
communities and their impact on global biogeochemical processes. Recent ocean …

Introduction Continuous advances in mass spectrometry (MS) technologies have enabled
deeper and more reproducible proteome characterization and a better understanding of …

Proteogenomics is an emerging approach to improve gene annotation and interpretation of
proteomics data. Here we present JUMPg, an integrative proteogenomics pipeline including …