Designing biological systems: systems engineering meets synthetic biology
S Rollié, M Mangold, K Sundmacher - Chemical Engineering Science, 2012 - Elsevier
Synthetic Biology offers qualitatively new perspectives on the benefits of industrially
harnessed biological processes. The ability to modify and reprogramme natural biology …
harnessed biological processes. The ability to modify and reprogramme natural biology …
Systems biology—an engineering perspective
A Kremling, J Saez-Rodriguez - Journal of biotechnology, 2007 - Elsevier
The interdisciplinary field of systems biology has evolved rapidly over the last years.
Different disciplines have aided the development of both its experimental and theoretical …
Different disciplines have aided the development of both its experimental and theoretical …
Bistability and oscillations in the Huang-Ferrell model of MAPK signaling
L Qiao, RB Nachbar, IG Kevrekidis… - PLoS computational …, 2007 - journals.plos.org
Physicochemical models of signaling pathways are characterized by high levels of structural
and parametric uncertainty, reflecting both incomplete knowledge about signal transduction …
and parametric uncertainty, reflecting both incomplete knowledge about signal transduction …
The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data
R Samaga, J Saez-Rodriguez… - PLoS computational …, 2009 - journals.plos.org
The epidermal growth factor receptor (EGFR) signaling pathway is probably the best-studied
receptor system in mammalian cells, and it also has become a popular example for …
receptor system in mammalian cells, and it also has become a popular example for …
A Petri net approach to the study of persistence in chemical reaction networks
Persistence is the property, for differential equations in Rn, that solutions starting in the
positive orthant do not approach the boundary of the orthant. For chemical reactions and …
positive orthant do not approach the boundary of the orthant. For chemical reactions and …
[图书][B] Feedback control in systems biology
C Cosentino, D Bates - 2011 - books.google.com
Like engineering systems, biological systems must also operate effectively in the presence
of internal and external uncertainty—such as genetic mutations or temperature changes, for …
of internal and external uncertainty—such as genetic mutations or temperature changes, for …
Chemical reaction systems with toric steady states
Mass-action chemical reaction systems are frequently used in computational biology. The
corresponding polynomial dynamical systems are often large (consisting of tens or even …
corresponding polynomial dynamical systems are often large (consisting of tens or even …
On the number of steady states in a multiple futile cycle
The multisite phosphorylation-dephosphorylation cycle is a motif repeatedly used in cell
signaling. This motif itself can generate a variety of dynamic behaviors like bistability and …
signaling. This motif itself can generate a variety of dynamic behaviors like bistability and …
Subnetwork analysis reveals dynamic features of complex (bio) chemical networks
In analyzing and mathematical modeling of complex (bio) chemical reaction networks,
formal methods that connect network structure and dynamic behavior are needed because …
formal methods that connect network structure and dynamic behavior are needed because …
Catalytic constants enable the emergence of bistability in dual phosphorylation
C Conradi, M Mincheva - Journal of The Royal Society …, 2014 - royalsocietypublishing.org
Dual phosphorylation of proteins is a principal component of intracellular signalling.
Bistability is considered an important property of such systems and its origin is not yet …
Bistability is considered an important property of such systems and its origin is not yet …