Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen
Virus host shifts are generally associated with novel adaptations to exploit the cells of the
new host species optimally. Surprisingly, Severe Acute Respiratory Syndrome Coronavirus …
new host species optimally. Surprisingly, Severe Acute Respiratory Syndrome Coronavirus …
Phylogenetic comparative methods and the evolution of multivariate phenotypes
DC Adams, ML Collyer - Annual Review of Ecology, Evolution …, 2019 - annualreviews.org
Evolutionary biology is multivariate, and advances in phylogenetic comparative methods for
multivariate phenotypes have surged to accommodate this fact. Evolutionary trends in …
multivariate phenotypes have surged to accommodate this fact. Evolutionary trends in …
phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things)
LJ Revell - PeerJ, 2024 - peerj.com
Phylogenetic comparative methods comprise the general endeavor of using an estimated
phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution …
phylogenetic tree (or set of trees) to make secondary inferences: about trait evolution …
Data integration in Bayesian phylogenetics
Researchers studying the evolution of viral pathogens and other organisms increasingly
encounter and use large and complex data sets from multiple different sources. Statistical …
encounter and use large and complex data sets from multiple different sources. Statistical …
Signatures of echolocation and dietary ecology in the adaptive evolution of skull shape in bats
Morphological diversity may arise rapidly as a result of adaptation to novel ecological
opportunities, but early bursts of trait evolution are rarely observed. Rather, models of …
opportunities, but early bursts of trait evolution are rarely observed. Rather, models of …
Phylogenetic trees and networks can serve as powerful and complementary approaches for analysis of genomic data
Genomic data have had a profound impact on nearly every biological discipline. In
systematics and phylogenetics, the thousands of loci that are now being sequenced can be …
systematics and phylogenetics, the thousands of loci that are now being sequenced can be …
A cautionary note on “A cautionary note on the use of Ornstein Uhlenbeck models in macroevolutionary studies”
Abstract Models based on the Ornstein–Uhlenbeck process have become standard for the
comparative study of adaptation. have cast doubt on this practice by claiming statistical …
comparative study of adaptation. have cast doubt on this practice by claiming statistical …
A penalized likelihood framework for high-dimensional phylogenetic comparative methods and an application to new-world monkeys brain evolution
Working with high-dimensional phylogenetic comparative data sets is challenging because
likelihood-based multivariate methods suffer from low statistical performances as the …
likelihood-based multivariate methods suffer from low statistical performances as the …
Phylogenetic comparative methods on phylogenetic networks with reticulations
The goal of phylogenetic comparative methods (PCMs) is to study the distribution of
quantitative traits among related species. The observed traits are often seen as the result of …
quantitative traits among related species. The observed traits are often seen as the result of …
Evolution of cortical geometry and its link to function, behaviour and ecology
Studies in comparative neuroanatomy and of the fossil record demonstrate the influence of
socio-ecological niches on the morphology of the cerebral cortex, but have led to oftentimes …
socio-ecological niches on the morphology of the cerebral cortex, but have led to oftentimes …