Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution

KR Bredemeyer, LD Hillier, AJ Harris, GM Hughes… - Nature …, 2023 - nature.com
The role of structurally dynamic genomic regions in speciation is poorly understood due to
challenges inherent in diploid genome assembly. Here we reconstructed the evolutionary …

Tandem NBPF 3mer HORs (Olduvai triplets) in Neanderthal and two novel HOR tandem arrays in human chromosome 1 T2T-CHM13 assembly

M Glunčić, I Vlahović, M Rosandić, V Paar - Scientific Reports, 2023 - nature.com
It is known that the~ 1.6 kb Neuroblastoma BreakPoint Family (NBPF) repeats are human
specific and contributing to cognitive capabilities, with increasing frequency in higher order …

Tandemly repeated NBPF HOR copies (Olduvai triplets): Possible impact on human brain evolution

M Glunčić, I Vlahović, M Rosandić… - Life science …, 2023 - life-science-alliance.org
Previously it was found that the neuroblastoma breakpoint family (NBPF) gene repeat units
of∼ 1.6 kb have an important role in human brain evolution and function. The higher order …

Novel Concept of Alpha Satellite Cascading Higher-Order Repeats (HORs) and Precise Identification of 15mer and 20mer Cascading HORs in Complete T2T-CHM13 …

M Glunčić, I Vlahović, M Rosandić, V Paar - International Journal of …, 2024 - mdpi.com
Unraveling the intricate centromere structure of human chromosomes holds profound
implications, illuminating fundamental genetic mechanisms and potentially advancing our …

[HTML][HTML] Precise identification of cascading alpha satellite higher order repeats (HORs) in T2T-CHM13 assembly of human chromosome 3

M Glunčić, I Vlahović, M Rosandić… - Croatian Medical …, 2024 - ncbi.nlm.nih.gov
Aim To precisely identify and analyze alpha-satellite higher-order repeats (HORs) in T2T-
CHM13 assembly of human chromosome 3. Methods From the recently sequenced …

Global Repeat Map (GRM): advantageous method for discovery of largest Higher-Order Repeats (HORs) in Neuroblastoma Breakpoint Family (NBPF) genes, in …

V Paar, I Vlahović, M Rosandić, M Glunčić - Satellite DNAs in Physiology …, 2021 - Springer
Here we present three interesting novel human Higher-Order Repeats (HORs) discovered
using the HOR-searching method with GRM algorithm:(a) The novel Neuroblastoma …

Precise identification of Higher Order Repeats (HORs) in T2T-CHM13 assembly of human chromosome 21–novel 52mer HOR and failures of hg38 assembly

M Glunčić, I Vlahović, M Rosandić, V Paar - 2024 - researchsquare.com
From the complete T2T-CHM13 assembly of human chromosome 21, recently sequenced by
the T2T Consortium, the precise alpha satellite higher-order repeat (HOR) structure is …

Tandemly repeated NBPF 3mer HOR copies (Olduvai triplets) in Neanderthal AltaiNea. hg19 assembly and two novel tandem arrays of NBPF 3mer HOR repeats in …

M Glunčić, I Vlahović, M Rosandić, V Paar - bioRxiv, 2023 - biorxiv.org
It is known that the∼ 1.6 kb NBPF repeats are human specific and contributing to cognitive
capabilities, with increasing frequency in higher order repeat 3mer HORs (Olduvai triplets) …

Global Repeat Map (GRM) algorithm as genomic technology for Higher Order Repeat identification

I Vlahović - Central European Conference on Information and …, 2022 - search.proquest.com
Posljednjih godina nove tehnologije za sekvenciranje DNK sekvenci proširile su istraživanja
uloga tandemnih repeticija u eukariotima, osobito onih koji se nalaze u području centromere …

[PDF][PDF] Global Repeat Map (GRM) algorithm as genomic technology for Higher Order Repeat identification Algoritam globalne karte ponavljanja (Global Repeat map …

I Vlahović - archive.ceciis.foi.hr
Posljednjih godina nove tehnologije za sekvenciranje DNK sekvenci proširile su istraživanja
uloga tandemnih repeticija u eukariotima, osobito onih koji se nalaze u području centromere …