From structure and dynamics to biomolecular functions: The ubiquitous role of solvent in biology

S Mondal, B Bagchi - Current Opinion in Structural Biology, 2022 - Elsevier
Biological activity requires a solvent that can provide a suitable environment, which satisfies
the twin need for stability and the ability to change. Among all the solvents water plays the …

Spatially resolved hydration thermodynamics in biomolecular systems

S Mukherjee, LV Schäfer - The Journal of Physical Chemistry B, 2022 - ACS Publications
Water is essential for the structure, dynamics, energetics, and thus the function of
biomolecules. It is a formidable challenge to elicit, in microscopic detail, the role of the …

Investigation of the enhancement mechanism of ethanol addition on the gel performance of heat-induced surimi

Z Xiong, X Wang, M Li, T Shi, W Jin, J Li, L Yuan… - Journal of Food …, 2023 - Elsevier
This study investigated the mechanism of ethanol enhancing the gel properties of heat-
induced silver carp (Hypophthalmichthys molitrix) surimi gels. The presence of ethanol …

Understanding the intricacy of protein in hydrated deep eutectic solvent: Solvation dynamics, conformational fluctuation dynamics, and stability

T Khan, N Das, KS Negi, S Bhowmik, P Sen - International Journal of …, 2023 - Elsevier
Deep eutectic solvents (DESs) are potential biocatalytic media due to their easy preparation,
fine-tuneability, biocompatibility, and most importantly, due to their ability to keep protein …

Computational discovery of chemically patterned surfaces that effect unique hydration water dynamics

JI Monroe, MS Shell - … of the National Academy of Sciences, 2018 - National Acad Sciences
The interactions of water with solid surfaces govern their apparent hydrophobicity/
hydrophilicity, influenced at the molecular scale by surface coverage of chemical groups of …

Structural stability of insulin oligomers and protein association–dissociation processes: Free energy landscape and universal role of water

S Mukherjee, S Acharya, S Mondal… - The Journal of …, 2021 - ACS Publications
Association and dissociation of proteins are important biochemical events. In this Feature
Article, we analyze the available studies of these processes for insulin oligomers in aqueous …

[HTML][HTML] Protein hydration dynamics: much ado about nothing?

S Mondal, S Mukherjee, B Bagchi - The Journal of Physical …, 2017 - ACS Publications
We all know that water is essential for life on Earth. 1− 3 Its multifarious functions hardly
need any further elaboration. 4− 7 It not only stabilizes proteins, DNA, and lipid membranes …

Osmolyte induced protein stabilization: modulation of associated water dynamics might be a key factor

KS Negi, N Das, T Khan, P Sen - Physical Chemistry Chemical Physics, 2023 - pubs.rsc.org
The mechanism of protein stabilization by osmolytes remains one of the most important and
long-standing puzzles. The traditional explanation of osmolyte-induced stability through the …

How proteins modify water dynamics

F Persson, P Söderhjelm, B Halle - The Journal of chemical physics, 2018 - pubs.aip.org
The dynamics of the protein-water interface is of fundamental importance for many biological
processes. Accordingly, a wide array of experimental techniques have been deployed in the …

Mechanism of solvent control of protein dynamics

S Mukherjee, S Mondal, B Bagchi - Physical review letters, 2019 - APS
We find that the coupled interactions between protein and water polarization fluctuations
play a dominant role in driving the configuration space random walk of solvated proteins. We …