[HTML][HTML] Optimized libraries for CRISPR-Cas9 genetic screens with multiple modalities

KR Sanson, RE Hanna, M Hegde, KF Donovan… - Nature …, 2018 - nature.com
The creation of genome-wide libraries for CRISPR knockout (CRISPRko), interference
(CRISPRi), and activation (CRISPRa) has enabled the systematic interrogation of gene …

Genome-wide CRISPR-Cas9 screening in mammalian cells

SL Jason, K Yusa - Methods, 2019 - Elsevier
Forward genetic screens are a powerful and unbiased approach for uncovering the genetic
basis behind a specific phenotype. Genome-wide mutagenesis followed by phenotypic …

[HTML][HTML] A genome-wide in vivo CRISPR screen identifies essential regulators of T cell migration to the CNS in a multiple sclerosis model

A Kendirli, C de la Rosa, KF Lämmle, K Eglseer… - Nature …, 2023 - nature.com
Multiple sclerosis (MS) involves the infiltration of autoreactive T cells into the CNS, yet we
lack a comprehensive understanding of the signaling pathways that regulate this process …

[HTML][HTML] Identifying chemogenetic interactions from CRISPR screens with drugZ

M Colic, G Wang, M Zimmermann, K Mascall… - Genome medicine, 2019 - Springer
Background Chemogenetic profiling enables the identification of gene mutations that
enhance or suppress the activity of chemical compounds. This knowledge provides insights …

Validating genome-wide CRISPR-Cas9 function improves screening in the oleaginous yeast Yarrowia lipolytica

C Schwartz, JF Cheng, R Evans, CA Schwartz… - Metabolic …, 2019 - Elsevier
Genome-wide mutational screens are central to understanding the genetic underpinnings of
evolved and engineered phenotypes. The widespread adoption of CRISPR-Cas9 genome …

Minimized combinatorial CRISPR screens identify genetic interactions in autophagy

V Diehl, M Wegner, P Grumati, K Husnjak… - Nucleic acids …, 2021 - academic.oup.com
Combinatorial CRISPR-Cas screens have advanced the mapping of genetic interactions,
but their experimental scale limits the number of targetable gene combinations. Here, we …

[HTML][HTML] Genome-wide CRISPR-KO screen uncovers mTORC1-mediated Gsk3 regulation in naive pluripotency maintenance and dissolution

M Li, SL Jason, K Tilgner, SH Ong, H Koike-Yusa… - Cell reports, 2018 - cell.com
The genetic basis of naive pluripotency maintenance and loss is a central question in
embryonic stem cell biology. Here, we deploy CRISPR-knockout-based screens in mouse …

[HTML][HTML] Unsupervised correction of gene-independent cell responses to CRISPR-Cas9 targeting

F Iorio, FM Behan, E Gonçalves, SG Bhosle, E Chen… - BMC genomics, 2018 - Springer
Background Genome editing by CRISPR-Cas9 technology allows large-scale screening of
gene essentiality in cancer. A confounding factor when interpreting CRISPR-Cas9 screens …

JACKS: joint analysis of CRISPR/Cas9 knockout screens

F Allen, F Behan, A Khodak, F Iorio, K Yusa… - Genome …, 2019 - genome.cshlp.org
Genome-wide CRISPR/Cas9 knockout screens are revolutionizing mammalian functional
genomics. However, their range of applications remains limited by signal variability from …

[HTML][HTML] Pooled library screening with multiplexed Cpf1 library

J Liu, S Srinivasan, CY Li, IL Ho, J Rose… - Nature …, 2019 - nature.com
Capitalizing on the inherent multiplexing capability of AsCpf1, we developed a multiplexed,
high-throughput screening strategy that minimizes library size without sacrificing gene …