[HTML][HTML] Twisting and stretching single DNA molecules

T Strick, JF Allemand, V Croquette… - Progress in biophysics and …, 2000 - Elsevier
The elastic properties of DNA are essential for its biological function. They control its
bending and twisting as well as the induction of structural modifications in the molecule …

Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity

HG Garcia, P Grayson, L Han… - Biopolymers …, 2007 - Wiley Online Library
The mechanical properties of DNA play a critical role in many biological functions. For
example, DNA packing in viruses involves confining the viral genome in a volume (the viral …

Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation

HB Ngo, GA Lovely, R Phillips, DC Chan - Nature communications, 2014 - nature.com
TFAM (transcription factor A, mitochondrial) is a DNA-binding protein that activates
transcription at the two major promoters of mitochondrial DNA (mtDNA)—the light strand …

Processive translocation and DNA unwinding by individual RecBCD enzyme molecules

PR Bianco, LR Brewer, M Corzett, R Balhorn, Y Yeh… - Nature, 2001 - nature.com
RecBCD enzyme is a processive DNA helicase and nuclease that participates in the repair
of chromosomal DNA through homologous recombination,. We have visualized directly the …

Gold nanoparticles: enhanced optical trapping and sensitivity coupled with significant heating

Y Seol, AE Carpenter, TT Perkins - Optics letters, 2006 - opg.optica.org
Gold nanoparticles appear to be superior handles in optical trapping assays. We
demonstrate that relatively large gold particles (R_b= 50 nm) indeed yield a sixfold …

Nonlinear dynamics and loop formation in Kirchhoff rods with implications to the mechanics of DNA and cables

S Goyal, NC Perkins, CL Lee - Journal of Computational Physics, 2005 - Elsevier
The paper contributes a general dynamical formulation and numerical solution procedure for
studying nonlinear and three-dimensional dynamics of Kirchhoff rods. Target applications …

Near-field-magnetic-tweezer manipulation of single DNA molecules

J Yan, D Skoko, JF Marko - Physical Review E, 2004 - APS
We have developed an instrument for micromanipulation of single DNA molecules end
labeled with 3-μ m-diameter paramagnetic particles. A small, permanent magnet that can be …

RNA polymerase as a molecular motor

J Gelles, R Landick - Cell, 1998 - cell.com
To transcribe DNA, RNA polymerase (RNAP) rapidly factors. Subsequent chain elongation
in the polymermoves along the DNA template, powered by free energy ase-DNA-RNA …

Ultrafast force-clamp spectroscopy of single molecules reveals load dependence of myosin working stroke

M Capitanio, M Canepari, M Maffei, D Beneventi… - Nature …, 2012 - nature.com
We describe a dual-trap force-clamp configuration that applies constant loads between a
binding protein and an intermittently interacting biological polymer. The method has a …

Optical traps for single molecule biophysics: a primer

TT Perkins - Laser & Photonics Reviews, 2009 - Wiley Online Library
Optical trapping experiments of different complexities are making a significant impact in
biology. This review seeks to highlight design choices for scientists entering the field or …