General theory for multiple input-output perturbations in complex molecular systems. 1. Linear QSPR electronegativity models in physical, organic, and medicinal …

H Gonzalez-Diaz, S Arrasate… - Current topics in …, 2013 - ingentaconnect.com
In general perturbation methods starts with a known exact solution of a problem and add
“small” variation terms in order to approach to a solution for a related problem without known …

An updated review on developing small molecule kinase inhibitors using computer-aided drug design approaches

L Li, S Liu, B Wang, F Liu, S Xu, P Li… - International Journal of …, 2023 - mdpi.com
Small molecule kinase inhibitors (SMKIs) are of heightened interest in the field of drug
research and development. There are 79 (as of July 2023) small molecule kinase inhibitors …

Review of MARCH-INSIDE & complex networks prediction of drugs: ADMET, anti-parasite activity, metabolizing enzymes and cardiotoxicity proteome biomarkers

H Gonzalez-Diaz, A Duardo-Sanchez… - Current Drug …, 2010 - benthamdirect.com
In this communication we carry out an in-depth review of a very versatile QSPR-like method.
The method name is MARCH-INSIDE (MARkov CHains Ivariants for Network Selection and …

Correlation of the toxicity of organic compounds to tadpoles using the Abraham model

KR Bowen, KB Flanagan, WE Acree Jr… - Science of the total …, 2006 - Elsevier
The narcotic and lethal concentrations of organic compounds have been compiled for
several tadpole species (Rana temporaria, Rana pipiens, Rana japonica, Xenopus laevis …

Graph theoretical similarity approach to compare molecular electrostatic potentials

RM Marin, NF Aguirre, EE Daza - Journal of chemical information …, 2008 - ACS Publications
In this work we introduce a graph theoretical method to compare MEPs, which is
independent of molecular alignment. It is based on the edit distance of weighted rooted …

A quantum-based similarity method in virtual screening

MM Al-Dabbagh, N Salim, M Himmat, A Ahmed… - Molecules, 2015 - mdpi.com
One of the most widely-used techniques for ligand-based virtual screening is similarity
searching. This study adopted the concepts of quantum mechanics to present as state-of-the …

QSAR study of natural, synthetic and environmental endocrine disrupting compounds for binding to the androgen receptor

CY Zhao, RS Zhang, HX Zhang, CX Xue… - SAR and QSAR in …, 2005 - Taylor & Francis
A large data set of 146 natural, synthetic and environmental chemicals belonging to a broad
range of structural classes have been tested for their relative binding affinity (expressed as …

Valence space electron momentum spectroscopy of diborane

F Wang, W Pang, M Huang - Journal of electron spectroscopy and related …, 2006 - Elsevier
A non-classical mechanism of binding in diborane (B2 H6) is derived quantum-mechanically
(B3LYP/6-311++ G**) using a dual-space analysis. High-resolution binding-energy spectra …

Electron shell contributions to gamma-ray spectra of positron annihilation in noble gases

F Wang, L Selvam, GF Gribakin… - Journal of Physics B …, 2010 - iopscience.iop.org
Gamma-ray positron annihilation spectra of the noble gases are simulated using
computational chemistry tools for the bound electron wavefunctions and plane-wave …

Investigating the utility of momentum-space descriptors for predicting blood–brain barrier penetration

JHA Al-Fahemi, DL Cooper, NL Allan - Journal of Molecular Graphics and …, 2007 - Elsevier
We investigate the possible use of families of momentum-space descriptors and of trivial
classical descriptors for the prediction of blood–brain barrier penetration, expressed as …