Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments
Analyzing proteins from single cells by tandem mass spectrometry (MS) has recently
become technically feasible. While such analysis has the potential to accurately quantify …
become technically feasible. While such analysis has the potential to accurately quantify …
Dealing with missing values in proteomics data
Proteomics data are often plagued with missingness issues. These missing values (MVs)
threaten the integrity of subsequent statistical analyses by reduction of statistical power …
threaten the integrity of subsequent statistical analyses by reduction of statistical power …
Revisiting the thorny issue of missing values in single-cell proteomics
C Vanderaa, L Gatto - Journal of Proteome Research, 2023 - ACS Publications
Missing values are a notable challenge when analyzing mass spectrometry-based
proteomics data. While the field is still actively debating the best practices, the challenge …
proteomics data. While the field is still actively debating the best practices, the challenge …
Evaluating proteomics imputation methods with improved criteria
L Harris, WE Fondrie, S Oh… - Journal of proteome …, 2023 - ACS Publications
Quantitative measurements produced by tandem mass spectrometry proteomics
experiments typically contain a large proportion of missing values. Missing values hinder …
experiments typically contain a large proportion of missing values. Missing values hinder …
BIRCH: an automated workflow for evaluation, correction, and visualization of batch effect in bottom-up mass spectrometry-based proteomics data
N Sundararaman, A Bhat, V Venkatraman… - Journal of proteome …, 2023 - ACS Publications
Recent surges in large-scale mass spectrometry (MS)-based proteomics studies demand a
concurrent rise in methods to facilitate reliable and reproducible data analysis …
concurrent rise in methods to facilitate reliable and reproducible data analysis …
ProJect: a powerful mixed-model missing value imputation method
Missing values (MVs) can adversely impact data analysis and machine-learning model
development. We propose a novel mixed-model method for missing value imputation (MVI) …
development. We propose a novel mixed-model method for missing value imputation (MVI) …
Comparative assessment and novel strategy on methods for imputing proteomics data
Missing values are a major issue in quantitative proteomics analysis. While many methods
have been developed for imputing missing values in high-throughput proteomics data, a …
have been developed for imputing missing values in high-throughput proteomics data, a …
Rapid multivariate analysis approach to explore differential spatial protein profiles in tissue
Spatially targeted proteomics analyzes the proteome of specific cell types and functional
regions within tissue. While spatial context is often essential to understanding biological …
regions within tissue. While spatial context is often essential to understanding biological …
Estimation of missing values in astronomical survey data: An improved local approach using cluster directed neighbor selection
P Keerin, T Boongoen - Information Processing & Management, 2022 - Elsevier
The work presented in this paper aims to develop new imputation methods to better handle
missing values encountered in astronomical data analysis, especially the classification of …
missing values encountered in astronomical data analysis, especially the classification of …
A review of cancer data fusion methods based on deep learning
With advancements in modern medical technology, an increasing amount of cancer-related
information can be acquired through various means, such as genomics, proteomics …
information can be acquired through various means, such as genomics, proteomics …