Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions

A Nunes-Nesi, AR Fernie, M Stitt - Molecular plant, 2010 - cell.com
In addition to light and water, CO 2 and mineral elements are required for plant growth and
development. Among these factors, nitrogen is critical, since it is needed to synthesize …

[HTML][HTML] Engineering cytosolic acetyl-coenzyme A supply in Saccharomyces cerevisiae: pathway stoichiometry, free-energy conservation and redox-cofactor balancing

HM Van Rossum, BU Kozak, JT Pronk… - Metabolic …, 2016 - Elsevier
Saccharomyces cerevisiae is an important industrial cell factory and an attractive
experimental model for evaluating novel metabolic engineering strategies. Many current and …

Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA

J Wang, BL Alvin Chew, Y Lai, H Dong… - Nucleic acids …, 2019 - academic.oup.com
Chemical modification of transcripts with 5′ caps occurs in all organisms. Here, we report a
systems-level mass spectrometry-based technique, CapQuant, for quantitative analysis of an …

Cross-platform comparison of methods for quantitative metabolomics of primary metabolism

JM Büscher, D Czernik, JC Ewald, U Sauer… - Analytical …, 2009 - ACS Publications
Quantitative metabolomics is under intense development, and no commonly accepted
standard analytical technique has emerged, yet. The employed analytical methods were …

Complex yeast–bacteria interactions affect the yield of industrial ethanol fermentation

F Senne de Oliveira Lino, D Bajic, JCC Vila… - Nature …, 2021 - nature.com
Sugarcane ethanol fermentation represents a simple microbial community dominated by S.
cerevisiae and co-occurring bacteria with a clearly defined functionality. In this study, we …

[HTML][HTML] ADP regulates SNF1, the Saccharomyces cerevisiae homolog of AMP-activated protein kinase

FV Mayer, R Heath, E Underwood, MJ Sanders… - Cell metabolism, 2011 - cell.com
The SNF1 protein kinase complex plays an essential role in regulating gene expression in
response to the level of extracellular glucose in budding yeast. SNF1 shares structural and …

Highly efficient 5' capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase

JG Bird, U Basu, D Kuster, A Ramachandran… - Elife, 2018 - elifesciences.org
Bacterial and eukaryotic nuclear RNA polymerases (RNAPs) cap RNA with the oxidized and
reduced forms of the metabolic effector nicotinamide adenine dinucleotide, NAD+ and …

Development and application of a differential method for reliable metabolome analysis in Escherichia coli

H Taymaz-Nikerel, M De Mey, C Ras, A ten Pierick… - Analytical …, 2009 - Elsevier
Quantitative metabolomics of microbial cultures requires well-designed sampling and
quenching procedures. We successfully developed and applied a differential method to …

[HTML][HTML] Replacement of the Saccharomyces cerevisiae acetyl-CoA synthetases by alternative pathways for cytosolic acetyl-CoA synthesis

BU Kozak, HM van Rossum, KR Benjamin, L Wu… - Metabolic …, 2014 - Elsevier
Cytosolic acetyl-coenzyme A is a precursor for many biotechnologically relevant compounds
produced by Saccharomyces cerevisiae. In this yeast, cytosolic acetyl-CoA synthesis and …

Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics

K van Eunen, JAL Kiewiet, HV Westerhoff… - PLoS computational …, 2012 - journals.plos.org
A decade ago, a team of biochemists including two of us, modeled yeast glycolysis and
showed that one of the most studied biochemical pathways could not be quite understood in …