Metabolic and signaling aspects underpinning the regulation of plant carbon nitrogen interactions
In addition to light and water, CO 2 and mineral elements are required for plant growth and
development. Among these factors, nitrogen is critical, since it is needed to synthesize …
development. Among these factors, nitrogen is critical, since it is needed to synthesize …
[HTML][HTML] Engineering cytosolic acetyl-coenzyme A supply in Saccharomyces cerevisiae: pathway stoichiometry, free-energy conservation and redox-cofactor balancing
HM Van Rossum, BU Kozak, JT Pronk… - Metabolic …, 2016 - Elsevier
Saccharomyces cerevisiae is an important industrial cell factory and an attractive
experimental model for evaluating novel metabolic engineering strategies. Many current and …
experimental model for evaluating novel metabolic engineering strategies. Many current and …
Quantifying the RNA cap epitranscriptome reveals novel caps in cellular and viral RNA
Chemical modification of transcripts with 5′ caps occurs in all organisms. Here, we report a
systems-level mass spectrometry-based technique, CapQuant, for quantitative analysis of an …
systems-level mass spectrometry-based technique, CapQuant, for quantitative analysis of an …
Cross-platform comparison of methods for quantitative metabolomics of primary metabolism
Quantitative metabolomics is under intense development, and no commonly accepted
standard analytical technique has emerged, yet. The employed analytical methods were …
standard analytical technique has emerged, yet. The employed analytical methods were …
Complex yeast–bacteria interactions affect the yield of industrial ethanol fermentation
Sugarcane ethanol fermentation represents a simple microbial community dominated by S.
cerevisiae and co-occurring bacteria with a clearly defined functionality. In this study, we …
cerevisiae and co-occurring bacteria with a clearly defined functionality. In this study, we …
[HTML][HTML] ADP regulates SNF1, the Saccharomyces cerevisiae homolog of AMP-activated protein kinase
FV Mayer, R Heath, E Underwood, MJ Sanders… - Cell metabolism, 2011 - cell.com
The SNF1 protein kinase complex plays an essential role in regulating gene expression in
response to the level of extracellular glucose in budding yeast. SNF1 shares structural and …
response to the level of extracellular glucose in budding yeast. SNF1 shares structural and …
Highly efficient 5' capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase
Bacterial and eukaryotic nuclear RNA polymerases (RNAPs) cap RNA with the oxidized and
reduced forms of the metabolic effector nicotinamide adenine dinucleotide, NAD+ and …
reduced forms of the metabolic effector nicotinamide adenine dinucleotide, NAD+ and …
Development and application of a differential method for reliable metabolome analysis in Escherichia coli
H Taymaz-Nikerel, M De Mey, C Ras, A ten Pierick… - Analytical …, 2009 - Elsevier
Quantitative metabolomics of microbial cultures requires well-designed sampling and
quenching procedures. We successfully developed and applied a differential method to …
quenching procedures. We successfully developed and applied a differential method to …
[HTML][HTML] Replacement of the Saccharomyces cerevisiae acetyl-CoA synthetases by alternative pathways for cytosolic acetyl-CoA synthesis
BU Kozak, HM van Rossum, KR Benjamin, L Wu… - Metabolic …, 2014 - Elsevier
Cytosolic acetyl-coenzyme A is a precursor for many biotechnologically relevant compounds
produced by Saccharomyces cerevisiae. In this yeast, cytosolic acetyl-CoA synthesis and …
produced by Saccharomyces cerevisiae. In this yeast, cytosolic acetyl-CoA synthesis and …
Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics
K van Eunen, JAL Kiewiet, HV Westerhoff… - PLoS computational …, 2012 - journals.plos.org
A decade ago, a team of biochemists including two of us, modeled yeast glycolysis and
showed that one of the most studied biochemical pathways could not be quite understood in …
showed that one of the most studied biochemical pathways could not be quite understood in …