[HTML][HTML] Analysis of the anaerobic digestion metagenome under environmental stresses stimulating prophage induction

A Rossi, MS Morlino, M Gaspari, A Basile, P Kougias… - Microbiome, 2022 - Springer
Background The viral community has the potential to influence the structure of the
microbiome and thus the yield of the anaerobic digestion process. However, the virome …

[HTML][HTML] A unified compendium of prokaryotic and viral genomes from over 300 anaerobic digestion microbiomes

VB Centurion, A Rossi, E Orellana, G Ghiotto… - Environmental …, 2024 - Springer
Background The anaerobic digestion process degrades organic matter into simpler
compounds and occurs in strictly anaerobic and microaerophilic environments. The process …

[HTML][HTML] Characterization of phage vB_EcoS-EE09 infecting E. coli DSM613 Isolated from Wastewater Treatment Plant Effluent and Comparative Proteomics of the …

J Barrero-Canosa, L Wang, A Oyugi, S Klaes, P Fischer… - Microorganisms, 2023 - mdpi.com
Phages influence microbial communities, can be applied in phage therapy, or may serve as
bioindicators, eg, in (waste) water management. We here characterized the Escherichia …

Investigating the viral ecology and contribution to the microbial ecology in full-scale mesophilic anaerobic digesters

B Bhattarai, AS Bhattacharjee, FH Coutinho, R Goel - Chemosphere, 2024 - Elsevier
In an attempt to assess the diversity of viruses and their potential to modulate the
metabolism of functional microorganisms in anaerobic digesters, we collected digestate from …

[HTML][HTML] Viral Diversity in Benthic Abyssal Ecosystems: Ecological and Methodological Considerations

U Rosani, C Corinaldesi, G Luongo, M Sollitto… - Viruses, 2023 - mdpi.com
Viruses are the most abundant 'biological entities' in the world's oceans. However, technical
and methodological constraints limit our understanding of their diversity, particularly in …

[HTML][HTML] Degradation Kinetics of Lignocellulolytic Enzymes in a Biogas Reactor Using Quantitative Mass Spectrometry

J Küchler, K Willenbücher, E Reiß, L Nuß, M Conrady… - Fermentation, 2023 - mdpi.com
The supplementation of lignocellulose-degrading enzymes can be used to enhance the
performance of biogas production in industrial biogas plants. Since the structural stability of …

A global virome of methanogenic archaea highlights novel diversity and adaptations to the gut environment

S Medvedeva, G Borrel, M Krupovic, S Gribaldo - 2023 - researchsquare.com
Mobile genetic elements (MGEs), especially viruses, have a major impact on microbial
communities. Methanogenic archaea play key environmental and economical roles, being …

Introducing Casbah, Kronus, and MmasiCarm, Members of the Mycobacteriophage Subcluster B3

VA Delesalle, RE Ankeriasniemi, CM Lewis, JM Mody… - PHAGE, 2024 - liebertpub.com
Background: As part of a large science education effort, bacteriophages that lyse
Mycobacterium smegmatis mc2155 continue to be discovered. Materials and Methods …

Unraveling the viral dark matter of the rumen microbiome with a new global virome database

M Yan, AA Pratama, Z Li, Y Jiang, MB Sullivan, Z Yu - bioRxiv, 2022 - biorxiv.org
Like in the human gut and other environments, viruses are probably also diverse and
modulate the microbiome (both population and function) in the rumen of ruminants, but it …

[HTML][HTML] Special Issue “Bacteriophage Genomics”

IV Babkin, NV Tikunova - Microorganisms, 2023 - mdpi.com
Virus genomics as a separate branch of biology has emerged relatively recently. Although
the term “genomics” appeared only in 1986 [1], the history of genomics began in 1976, when …