[HTML][HTML] CLIP and complementary methods
RNA molecules start assembling into ribonucleoprotein (RNP) complexes during
transcription. Dynamic RNP assembly, largely directed by cis-acting elements on the RNA …
transcription. Dynamic RNP assembly, largely directed by cis-acting elements on the RNA …
Proteomic and interactomic insights into the molecular basis of cell functional diversity
I Bludau, R Aebersold - Nature Reviews Molecular Cell Biology, 2020 - nature.com
The ability of living systems to adapt to changing conditions originates from their capacity to
change their molecular constitution. This is achieved by multiple mechanisms that modulate …
change their molecular constitution. This is achieved by multiple mechanisms that modulate …
[HTML][HTML] The human RNA-binding proteome and its dynamics during translational arrest
J Trendel, T Schwarzl, R Horos, A Prakash, A Bateman… - Cell, 2019 - cell.com
Proteins and RNA functionally and physically intersect in multiple biological processes,
however, currently no universal method is available to purify protein-RNA complexes. Here …
however, currently no universal method is available to purify protein-RNA complexes. Here …
The regulation and functions of the nuclear RNA exosome complex
The RNA exosome complex is the most versatile RNA-degradation machine in eukaryotes.
The exosome has a central role in several aspects of RNA biogenesis, including RNA …
The exosome has a central role in several aspects of RNA biogenesis, including RNA …
[HTML][HTML] Distinctive patterns of transcription and RNA processing for human lincRNAs
Numerous long intervening noncoding RNAs (lincRNAs) are generated from the mammalian
genome by RNA polymerase II (Pol II) transcription. Although multiple functions have been …
genome by RNA polymerase II (Pol II) transcription. Although multiple functions have been …
Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors
The eukaryotic RNA exosome is an essential and conserved protein complex that can
degrade or process RNA substrates in the 3′-to-5′ direction. Since its discovery nearly …
degrade or process RNA substrates in the 3′-to-5′ direction. Since its discovery nearly …
[HTML][HTML] Genome-wide distribution of RNA-DNA hybrids identifies RNase H targets in tRNA genes, retrotransposons and mitochondria
During transcription, the nascent RNA can invade the DNA template, forming extended RNA-
DNA duplexes (R-loops). Here we employ ChIP-seq in strains expressing or lacking RNase …
DNA duplexes (R-loops). Here we employ ChIP-seq in strains expressing or lacking RNase …
RNA decay machines: the exosome
A Chlebowski, M Lubas, TH Jensen… - Biochimica et Biophysica …, 2013 - Elsevier
The multisubunit RNA exosome complex is a major ribonuclease of eukaryotic cells that
participates in the processing, quality control and degradation of virtually all classes of RNA …
participates in the processing, quality control and degradation of virtually all classes of RNA …
[HTML][HTML] A transcriptome-wide atlas of RNP composition reveals diverse classes of mRNAs and lncRNAs
AC Tuck, D Tollervey - Cell, 2013 - cell.com
Eukaryotic genomes generate a heterogeneous ensemble of mRNAs and long noncoding
RNAs (lncRNAs). LncRNAs and mRNAs are both transcribed by Pol II and acquire 5′ caps …
RNAs (lncRNAs). LncRNAs and mRNAs are both transcribed by Pol II and acquire 5′ caps …
[HTML][HTML] Extensive degradation of RNA precursors by the exosome in wild-type cells
RK Gudipati, Z Xu, A Lebreton, B Séraphin… - Molecular cell, 2012 - cell.com
The exosome is a complex involved in the maturation of rRNA and sn-snoRNA, in the
degradation of short-lived noncoding RNAs, and in the quality control of RNAs produced in …
degradation of short-lived noncoding RNAs, and in the quality control of RNAs produced in …