Spatial multi-omics: novel tools to study the complexity of cardiovascular diseases

P Kiessling, C Kuppe - Genome Medicine, 2024 - Springer
Spatial multi-omic studies have emerged as a promising approach to comprehensively
analyze cells in tissues, enabling the joint analysis of multiple data modalities like …

Spatial multimodal analysis of transcriptomes and metabolomes in tissues

M Vicari, R Mirzazadeh, A Nilsson, R Shariatgorji… - Nature …, 2024 - nature.com
We present a spatial omics approach that combines histology, mass spectrometry imaging
and spatial transcriptomics to facilitate precise measurements of mRNA transcripts and low …

Next-Generation Sequencing-Based Spatial Transcriptomics: A Perspective from Barcoding Chemistry

W Shi, J Zhang, S Huang, Q Fan, J Cao, J Zeng, L Wu… - JACS Au, 2024 - ACS Publications
Gene expression profiling of tissue cells with spatial context is in high demand to reveal cell
types, locations, and intercellular or molecular interactions for physiological and …

Tissue characterization at an enhanced resolution across spatial omics platforms with deep generative model

B Li, F Bao, Y Hou, F Li, H Li, Y Deng, Q Dai - Nature Communications, 2024 - nature.com
Recent advances in spatial omics have expanded the spectrum of profiled molecular
categories beyond transcriptomics. However, many of these technologies are constrained by …

Dissecting mammalian reproduction with spatial transcriptomics

X Zhang, Q Cao, S Rajachandran… - Human …, 2023 - academic.oup.com
BACKGROUND Mammalian reproduction requires the fusion of two specialized cells: an
oocyte and a sperm. In addition to producing gametes, the reproductive system also …

Spatial mapping of the DNA adducts in cancer

KL Krieger, EK Mann, KJ Lee, E Bolterstein… - DNA repair, 2023 - Elsevier
DNA adducts and strand breaks are induced by various exogenous and endogenous
agents. Accumulation of DNA damage is implicated in many disease processes, including …

Lactobacillus casei-Derived Postbiotics Elevate the Bioaccessibility of Proteins via Allosteric Regulation of Pepsin and Trypsin and Introduction of Endopeptidases

Z Fan, W Jia - Journal of Agricultural and Food Chemistry, 2023 - ACS Publications
The potential of probiotics to benefit digestion has been widely reported, while its utilization
in high-risk patients and potential adverse reactions have focused interest on postbiotics. A …

Hest-1k: A dataset for spatial transcriptomics and histology image analysis

G Jaume, P Doucet, AH Song, MY Lu… - arXiv preprint arXiv …, 2024 - arxiv.org
Spatial transcriptomics (ST) enables interrogating the molecular composition of tissue with
ever-increasing resolution, depth, and sensitivity. However, costs, rapidly evolving …

A versatile tissue-rolling technique for spatial-omics analyses of the entire murine gastrointestinal tract

G Monasterio, RA Morales, DA Bejarano, XM Abalo… - Nature …, 2024 - nature.com
Tissues are dynamic and complex biological systems composed of specialized cell types
that interact with each other for proper biological function. To comprehensively characterize …

Single-Cell Sequencing in Neurodegenerative Disorders

J Pozojevic, M Spielmann - Molecular Diagnosis & Therapy, 2023 - Springer
Neurodegenerative disorders are typically characterized by late onset progressive damage
to specific (sub) populations of cells of the nervous system that are essential for mobility …