A review on mass spectrometry-based quantitative proteomics: Targeted and data independent acquisition

V Vidova, Z Spacil - Analytica chimica acta, 2017 - Elsevier
Mass spectrometry (MS) based proteomics have achieved a near-complete proteome
coverage in humans and in several other organisms, producing a wealth of information …

Parallel reaction monitoring using quadrupole‐Orbitrap mass spectrometer: principle and applications

A Bourmaud, S Gallien, B Domon - Proteomics, 2016 - Wiley Online Library
Targeted mass spectrometry‐based approaches are nowadays widely used for quantitative
proteomics studies and more recently have been implemented on high resolution/accurate …

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

LC Gillet, P Navarro, S Tate, H Röst, N Selevsek… - Molecular & Cellular …, 2012 - ASBMB
Most proteomic studies use liquid chromatography coupled to tandem mass spectrometry to
identify and quantify the peptides generated by the proteolysis of a biological sample …

Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics

AC Peterson, JD Russell, DJ Bailey… - Molecular & cellular …, 2012 - ASBMB
Selected reaction monitoring on a triple quadrupole mass spectrometer is currently
experiencing a renaissance within the proteomics community for its, as yet, unparalleled …

Targeted proteomic quantification on quadrupole-orbitrap mass spectrometer

S Gallien, E Duriez, C Crone, M Kellmann… - Molecular & cellular …, 2012 - ASBMB
There is an immediate need for improved methods to systematically and precisely quantify
large sets of peptides in complex biological samples. To date protein quantification in …

mProphet: automated data processing and statistical validation for large-scale SRM experiments

L Reiter, O Rinner, P Picotti, R Hüttenhain, M Beck… - Nature …, 2011 - nature.com
Selected reaction monitoring (SRM) is a targeted mass spectrometric method that is
increasingly used in proteomics for the detection and quantification of sets of preselected …

[HTML][HTML] Mass spectrometry based biomarker discovery, verification, and validation–quality assurance and control of protein biomarker assays

CE Parker, CH Borchers - Molecular oncology, 2014 - Elsevier
In its early years, mass spectrometry (MS)-based proteomics focused on the cataloging of
proteins found in different species or different tissues. By 2005, proteomics was being used …

Pitfalls associated with the use of liquid chromatography–tandem mass spectrometry in the clinical laboratory

M Vogeser, C Seger - Clinical chemistry, 2010 - academic.oup.com
BACKGROUND Novel mass spectrometric techniques such as atmospheric pressure
ionization and tandem mass spectrometry have substantially extended the spectrum of …

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics

R Hüttenhain, M Soste, N Selevsek, H Röst… - Science translational …, 2012 - science.org
The rigorous testing of hypotheses on suitable sample cohorts is a major limitation in
translational research. This is particularly the case for the validation of protein biomarkers; …

Technical aspects and inter-laboratory variability in native peptide profiling: The CE–MS experience

H Mischak, A Vlahou, JPA Ioannidis - Clinical biochemistry, 2013 - Elsevier
Mass spectrometry platforms have attracted a lot of interest in the last 2 decades as profiling
tools for native peptides and proteins with clinical potential. However, limitations associated …