Microglial contribution to the pathology of neurodevelopmental disorders in humans

R Matuleviciute, ET Akinluyi, TAO Muntslag… - Acta …, 2023 - Springer
Microglia are the brain's resident macrophages, which guide various developmental
processes crucial for brain maturation, activity, and plasticity. Microglial progenitors enter the …

Fabricating biomimetic materials with ice‐templating for biomedical applications

X Lin, L Fan, L Wang, AM Filppula, Y Yu… - Smart …, 2023 - Wiley Online Library
The proper organization of cells and tissues is essential for their functionalization in living
organisms. To create materials that mimic natural structures, researchers have developed …

Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution

B Li, W Zhang, C Guo, H Xu, L Li, M Fang, Y Hu… - Nature …, 2022 - nature.com
Spatial transcriptomics approaches have substantially advanced our capacity to detect the
spatial distribution of RNA transcripts in tissues, yet it remains challenging to characterize …

[HTML][HTML] Spatial atlas of the mouse central nervous system at molecular resolution

H Shi, Y He, Y Zhou, J Huang, K Maher, B Wang… - Nature, 2023 - nature.com
Spatially charting molecular cell types at single-cell resolution across the 3D volume is
critical for illustrating the molecular basis of brain anatomy and functions. Single-cell RNA …

Comprehensive spatiotemporal mapping of single-cell lineages in developing mouse brain by CRISPR-based barcoding

L Xie, H Liu, Z You, L Wang, Y Li, X Zhang, X Ji, H He… - Nature …, 2023 - nature.com
A fundamental interest in developmental neuroscience lies in the ability to map the complete
single-cell lineages within the brain. To this end, we developed a CRISPR editing-based …

Spatial transcriptomics prediction from histology jointly through transformer and graph neural networks

Y Zeng, Z Wei, W Yu, R Yin, Y Yuan, B Li… - Briefings in …, 2022 - academic.oup.com
The rapid development of spatial transcriptomics allows the measurement of RNA
abundance at a high spatial resolution, making it possible to simultaneously profile gene …

Metabolic lactate production coordinates vasculature development and progenitor behavior in the developing mouse neocortex

X Dong, Q Zhang, X Yu, D Wang, J Ma, J Ma… - Nature …, 2022 - nature.com
Proper neural progenitor behavior in conjunction with orderly vasculature formation is
fundamental to the development of the neocortex. However, the mechanisms coordinating …

[HTML][HTML] A comprehensive overview of graph neural network-based approaches to clustering for spatial transcriptomics T. Liu et al. Overview of Spatial Transcriptomics …

T Liu, ZY Fang, Z Zhang, Y Yu, M Li, MZ Yin - Computational and Structural …, 2023 - Elsevier
Spatial transcriptomics technologies enable researchers to accurately quantify and localize
messenger ribonucleic acid (mRNA) transcripts at a high resolution while preserving their …

Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics

GS Gulati, JP D'Silva, Y Liu, L Wang… - … Reviews Molecular Cell …, 2024 - nature.com
Single-cell transcriptomics has broadened our understanding of cellular diversity and gene
expression dynamics in healthy and diseased tissues. Recently, spatial transcriptomics has …

Cell-type-resolved mosaicism reveals clonal dynamics of the human forebrain

C Chung, X Yang, RF Hevner, K Kennedy, KI Vong… - Nature, 2024 - nature.com
Debate remains around the anatomical origins of specific brain cell subtypes and lineage
relationships within the human forebrain,,,,,–. Thus, direct observation in the mature human …