A survey of drug-target interaction and affinity prediction methods via graph neural networks

Y Zhang, Y Hu, N Han, A Yang, X Liu, H Cai - Computers in Biology and …, 2023 - Elsevier
The tasks of drug-target interaction (DTI) and drug-target affinity (DTA) prediction play
important roles in the field of drug discovery. However, biological experiment-based …

Clustering ensemble in scRNA-seq data analysis: Methods, applications and challenges

X Nie, D Qin, X Zhou, H Duo, Y Hao, B Li… - Computers in biology and …, 2023 - Elsevier
With the rapid development of single-cell RNA-sequencing techniques, various
computational methods and tools were proposed to analyze these high-throughput data …

An adaptive quadratic interpolation and rounding mechanism sine cosine algorithm with application to constrained engineering optimization problems

X Yang, R Wang, D Zhao, F Yu, C Huang… - Expert Systems with …, 2023 - Elsevier
The sine cosine algorithm (SCA) is a well-known meta-heuristic optimization algorithm. SCA
has received much attention in various optimization fields due to its simple structure and …

Parameter estimation of static solar photovoltaic models using Laplacian Nelder-Mead hunger games search

S Yu, AA Heidari, C He, Z Cai, MM Althobaiti… - Solar Energy, 2022 - Elsevier
Photovoltaic (PV) technology can convert solar energy to electric power, which is an
essential tool for future years. Subsequently, several static solar PV models have been …

Advanced orthogonal learning and Gaussian barebone hunger games for engineering design

X Zhou, W Gui, AA Heidari, Z Cai… - Journal of …, 2022 - academic.oup.com
The hunger games search (HGS) algorithm is a recently proposed population-based
optimization algorithm that mimics a common phenomenon of animals searching for food …

The rise of nonnegative matrix factorization: algorithms and applications

YT Guo, QQ Li, CS Liang - Information Systems, 2024 - Elsevier
Although nonnegative matrix factorization (NMF) is widely used, some matrix factorization
methods result in misleading results and waste of computing resources due to lack of timely …

Laplace crossover and random replacement strategy boosted Harris hawks optimization: Performance optimization and analysis

H Yu, S Qiao, AA Heidari, AA El-Saleh… - Journal of …, 2022 - academic.oup.com
Harris hawks optimization has been a popular swarm intelligence algorithm in recent years.
In order to improve the local exploitation ability of the algorithm and improve the problem of …

Enhanced moth-flame optimizer with quasi-reflection and refraction learning with application to image segmentation and medical diagnosis

J Xia, Z Cai, AA Heidari, Y Ye, H Chen… - Current …, 2023 - ingentaconnect.com
Background: Moth-flame optimization will meet the premature and stagnation phenomenon
when encountering difficult optimization tasks. Objective: This paper presented a quasi …

Shared and individual representation learning with Feature Diversity for Deep MultiView Clustering

S Wang, L Chen, N Zheng, L Li, F Peng, J Lu - Information Sciences, 2023 - Elsevier
Due to the remarkable representation ability of Nonnegative matrix factorization (NMF), its
multiview variants have become a crucial kind of multiview representation learning methods …

Tuberculous pleural effusion prediction using ant colony optimizer with grade-based search assisted support vector machine

C Li, L Hou, J Pan, H Chen, X Cai… - Frontiers in …, 2022 - frontiersin.org
Introduction Although tuberculous pleural effusion (TBPE) is simply an inflammatory
response of the pleura caused by tuberculosis infection, it can lead to pleural adhesions and …