Plant evolution driven by interactions with symbiotic and pathogenic microbes

PM Delaux, S Schornack - Science, 2021 - science.org
BACKGROUND Microbial interactions have shaped plant diversity in terrestrial ecosystems.
By forming mutually beneficial symbioses, microbes helped plants colonize land more than …

Evolution of gene duplication in plants

N Panchy, M Lehti-Shiu, SH Shiu - Plant physiology, 2016 - academic.oup.com
Ancient duplication events and a high rate of retention of extant pairs of duplicate genes
have contributed to an abundance of duplicate genes in plant genomes. These duplicates …

The Chinese pine genome and methylome unveil key features of conifer evolution

S Niu, J Li, W Bo, W Yang, A Zuccolo, S Giacomello… - Cell, 2022 - cell.com
Conifers dominate the world's forest ecosystems and are the most widely planted tree
species. Their giant and complex genomes present great challenges for assembling a …

One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

A reference genome for pea provides insight into legume genome evolution

J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie… - Nature …, 2019 - nature.com
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …

Techno-economic analysis and life cycle assessment of a biorefinery utilizing reductive catalytic fractionation

AW Bartling, ML Stone, RJ Hanes, A Bhatt… - Energy & …, 2021 - pubs.rsc.org
Reductive catalytic fractionation (RCF) is a promising approach to fractionate lignocellulose
and convert lignin to a narrow product slate. To guide research towards commercialization …

Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

Chromosome-level genomes of three key Allium crops and their trait evolution

F Hao, X Liu, B Zhou, Z Tian, L Zhou, H Zong, J Qi… - Nature …, 2023 - nature.com
Allium crop breeding remains severely hindered due to the lack of high-quality reference
genomes. Here we report high-quality chromosome-level genome assemblies for three key …

MYB repressors as regulators of phenylpropanoid metabolism in plants

D Ma, CP Constabel - Trends in plant science, 2019 - cell.com
The phenylpropanoid pathway gives rise to lignin, flavonoids, and other metabolites and is
regulated by MYB transcription factors. Many R2R3-MYB transcriptional activators are …

The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome

MA Cregger, AM Veach, ZK Yang, MJ Crouch… - Microbiome, 2018 - Springer
Background Microorganisms serve important functions within numerous eukaryotic host
organisms. An understanding of the variation in the plant niche-level microbiome, from …