Harnessing genomics to fast-track genetic improvement in aquaculture

RD Houston, TP Bean, DJ Macqueen… - Nature Reviews …, 2020 - nature.com
Aquaculture is the fastest-growing farmed food sector and will soon become the primary
source of fish and shellfish for human diets. In contrast to crop and livestock production …

Research advances in the genomics and applications for molecular breeding of aquaculture animals

X You, X Shan, Q Shi - Aquaculture, 2020 - Elsevier
High-throughput sequencing technologies have been extensively applied to genetics and
breeding in the aquaculture industry. To date, many aquaculture animal genomes have …

[HTML][HTML] Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences

D Yu, Y Ren, M Uesaka, AJS Beavan… - Nature ecology & …, 2024 - nature.com
Polyploidy or whole-genome duplication (WGD) is a major event that drastically reshapes
genome architecture and is often assumed to be causally associated with organismal …

[HTML][HTML] Biosynthesis of saponin defensive compounds in sea cucumbers

R Thimmappa, S Wang, M Zheng, RC Misra… - Nature chemical …, 2022 - nature.com
Soft-bodied slow-moving sea creatures such as sea stars and sea cucumbers lack an
adaptive immune system and have instead evolved the ability to make specialized protective …

[HTML][HTML] Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes

F Marlétaz, A Couloux, J Poulain, K Labadie… - Cell Genomics, 2023 - cell.com
Sea urchins are emblematic models in developmental biology and display several
characteristics that set them apart from other deuterostomes. To uncover the genomic cues …

[HTML][HTML] Chromosome-level genome assembly of the sea cucumber Apostichopus japonicus

L Sun, C Jiang, F Su, W Cui, H Yang - Scientific Data, 2023 - nature.com
Sea cucumber is a morphologically diverse and ecologically important clade of
echinoderms. The sea cucumber Apostichopus japonicus is the most economically valuable …

[HTML][HTML] Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration

Y Shao, XB Wang, JJ Zhang, ML Li, SS Wu… - Nature …, 2020 - nature.com
The earthworm is particularly fascinating to biologists because of its strong regenerative
capacity. However, many aspects of its regeneration in nature remain elusive. Here we …

Diverse triterpene skeletons are derived from the expansion and divergent evolution of 2, 3-oxidosqualene cyclases in plants

J Wang, Y Guo, X Yin, X Wang, X Qi… - Critical Reviews in …, 2022 - Taylor & Francis
Triterpenoids are one of the largest groups of secondary metabolites and exhibit diverse
structures, which are derived from C30 skeletons that are biosynthesized via the isoprenoid …

The Holothuria leucospilota genome elucidates sacrificial organ expulsion and bioadhesive trap enriched with amyloid-patterned proteins

T Chen, C Ren, NK Wong, A Yan… - Proceedings of the …, 2023 - National Acad Sciences
Some tropical sea cucumbers of the family Holothuriidae can efficiently repel or even fatally
ensnare predators by sacrificially ejecting a bioadhesive matrix termed the Cuvierian organ …

Microbial community analysis using high-throughput sequencing technology: a beginner's guide for microbiologists

J Jo, J Oh, C Park - Journal of Microbiology, 2020 - Springer
Microbial communities present in diverse environments from deep seas to human body
niches play significant roles in the complex ecosystem and human health. Characterizing …