[HTML][HTML] A survey of best practices for RNA-seq data analysis

A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero… - Genome biology, 2016 - Springer
Abstract RNA-sequencing (RNA-seq) has a wide variety of applications, but no single
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …

Next-generation sequencing—an overview of the history, tools, and “Omic” applications

JK Kulski - Next generation sequencing-advances, applications …, 2016 - books.google.com
Next-generation sequencing (NGS) technologies using DNA, RNA, or methylation
sequencing have impacted enormously on the life sciences. NGS is the choice for large …

[HTML][HTML] Review on the computational genome annotation of sequences obtained by next-generation sequencing

GF Ejigu, J Jung - Biology, 2020 - mdpi.com
Simple Summary Due to the development of high-throughput sequencing technologies,
computational genome annotation of sequences has become one of the principal research …

Babelomics 5.0: functional interpretation for new generations of genomic data

R Alonso, F Salavert, F Garcia-Garcia… - Nucleic acids …, 2015 - academic.oup.com
Babelomics has been running for more than one decade offering a user-friendly interface for
the functional analysis of gene expression and genomic data. Here we present its fifth …

CSVS, a crowdsourcing database of the Spanish population genetic variability

M Peña-Chilet, G Roldán, J Perez-Florido… - Nucleic acids …, 2021 - academic.oup.com
The knowledge of the genetic variability of the local population is of utmost importance in
personalized medicine and has been revealed as a critical factor for the discovery of new …

spongeScan: A web for detecting microRNA binding elements in lncRNA sequences

P Furió-Tarí, S Tarazona, T Gabaldon… - Nucleic acids …, 2016 - academic.oup.com
Non-coding RNA transcripts such as microRNAs (miRNAs) and long non-coding RNAs
(lncRNAs) are important genetic regulators. However, the functions of many of these …

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum

T Bock, WH Chen, A Ori, N Malik… - Nucleic acids …, 2014 - academic.oup.com
The thermophilic fungus Chaetomium thermophilum holds great promise for structural
biology. To increase the efficiency of its biochemical and structural characterization and to …

A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies

A Alemán, F Garcia-Garcia, F Salavert… - Nucleic acids …, 2014 - academic.oup.com
Whole-exome sequencing has become a fundamental tool for the discovery of disease-
related genes of familial diseases and the identification of somatic driver variants in cancer …

[HTML][HTML] Techniques for profiling the cellular immune response and their implications for interventional oncology

T Garg, CR Weiss, RA Sheth - Cancers, 2022 - mdpi.com
Simple Summary The prognosis of patients with different types of cancer is usually predicted
with the help of the TNM staging guidelines; however, in recent years, there has been …

The Iberian Roma genetic variant server; population structure, susceptibility to disease and adaptive traits.

F Mavillard, J Perez-Florido, F Ortuno, A Valladares… - medRxiv, 2023 - medrxiv.org
The Roma are the most numerous ethnic minority in Europe. The Iberian Roma arrived in
the Iberian Peninsula five centuries ago and still today, they keep a strong group identity …