[HTML][HTML] A survey of best practices for RNA-seq data analysis
Abstract RNA-sequencing (RNA-seq) has a wide variety of applications, but no single
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …
Next-generation sequencing—an overview of the history, tools, and “Omic” applications
JK Kulski - Next generation sequencing-advances, applications …, 2016 - books.google.com
Next-generation sequencing (NGS) technologies using DNA, RNA, or methylation
sequencing have impacted enormously on the life sciences. NGS is the choice for large …
sequencing have impacted enormously on the life sciences. NGS is the choice for large …
[HTML][HTML] Review on the computational genome annotation of sequences obtained by next-generation sequencing
GF Ejigu, J Jung - Biology, 2020 - mdpi.com
Simple Summary Due to the development of high-throughput sequencing technologies,
computational genome annotation of sequences has become one of the principal research …
computational genome annotation of sequences has become one of the principal research …
Babelomics 5.0: functional interpretation for new generations of genomic data
Babelomics has been running for more than one decade offering a user-friendly interface for
the functional analysis of gene expression and genomic data. Here we present its fifth …
the functional analysis of gene expression and genomic data. Here we present its fifth …
CSVS, a crowdsourcing database of the Spanish population genetic variability
M Peña-Chilet, G Roldán, J Perez-Florido… - Nucleic acids …, 2021 - academic.oup.com
The knowledge of the genetic variability of the local population is of utmost importance in
personalized medicine and has been revealed as a critical factor for the discovery of new …
personalized medicine and has been revealed as a critical factor for the discovery of new …
spongeScan: A web for detecting microRNA binding elements in lncRNA sequences
P Furió-Tarí, S Tarazona, T Gabaldon… - Nucleic acids …, 2016 - academic.oup.com
Non-coding RNA transcripts such as microRNAs (miRNAs) and long non-coding RNAs
(lncRNAs) are important genetic regulators. However, the functions of many of these …
(lncRNAs) are important genetic regulators. However, the functions of many of these …
An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum
The thermophilic fungus Chaetomium thermophilum holds great promise for structural
biology. To increase the efficiency of its biochemical and structural characterization and to …
biology. To increase the efficiency of its biochemical and structural characterization and to …
A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies
Whole-exome sequencing has become a fundamental tool for the discovery of disease-
related genes of familial diseases and the identification of somatic driver variants in cancer …
related genes of familial diseases and the identification of somatic driver variants in cancer …
[HTML][HTML] Techniques for profiling the cellular immune response and their implications for interventional oncology
Simple Summary The prognosis of patients with different types of cancer is usually predicted
with the help of the TNM staging guidelines; however, in recent years, there has been …
with the help of the TNM staging guidelines; however, in recent years, there has been …
The Iberian Roma genetic variant server; population structure, susceptibility to disease and adaptive traits.
F Mavillard, J Perez-Florido, F Ortuno, A Valladares… - medRxiv, 2023 - medrxiv.org
The Roma are the most numerous ethnic minority in Europe. The Iberian Roma arrived in
the Iberian Peninsula five centuries ago and still today, they keep a strong group identity …
the Iberian Peninsula five centuries ago and still today, they keep a strong group identity …