[HTML][HTML] Enhancer–promoter specificity in gene transcription: molecular mechanisms and disease associations

MJ Friedman, T Wagner, H Lee… - … & Molecular Medicine, 2024 - nature.com
Although often located at a distance from their target gene promoters, enhancers are the
primary genomic determinants of temporal and spatial transcriptional specificity in …

[HTML][HTML] Function and evolution of the loop extrusion machinery in animals

E Kabirova, A Nurislamov, A Shadskiy… - International Journal of …, 2023 - mdpi.com
Structural maintenance of chromosomes (SMC) complexes are essential proteins found in
genomes of all cellular organisms. Essential functions of these proteins, such as mitotic …

Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells

S Iida, S Shinkai, Y Itoh, S Tamura, MT Kanemaki… - Science …, 2022 - science.org
Dynamic chromatin behavior plays a critical role in various genome functions. However, it
remains unclear how chromatin behavior changes during interphase, where the nucleus …

[HTML][HTML] Establishment of dsDNA-dsDNA interactions by the condensin complex

M Tang, G Pobegalov, H Tanizawa, ZA Chen… - Molecular cell, 2023 - cell.com
Condensin is a structural maintenance of chromosomes (SMC) complex family member
thought to build mitotic chromosomes by DNA loop extrusion. However, condensin variants …

Auxin-inducible degron system: an efficient protein degradation tool to study protein function

K Phanindhar, RK Mishra - Biotechniques, 2023 - Taylor & Francis
Targeted protein degradation, with its rapid protein depletion kinetics, allows the
measurement of acute changes in the cell. The auxin-inducible degron (AID) system, rapidly …

Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast

T Gerguri, X Fu, Y Kakui, BS Khatri… - Nucleic acids …, 2021 - academic.oup.com
Underlying higher order chromatin organization are Structural Maintenance of
Chromosomes (SMC) complexes, large protein rings that entrap DNA. The molecular …

Chromatin behavior in living cells: lessons from single‐nucleosome imaging and tracking

S Ide, S Tamura, K Maeshima - BioEssays, 2022 - Wiley Online Library
Eukaryotic genome DNA is wrapped around core histones and forms a nucleosome
structure. Together with associated proteins and RNAs, these nucleosomes are organized …

Condensin I folds the Caenorhabditis elegans genome

M Das, JI Semple, A Haemmerli, V Volodkina… - Nature …, 2024 - nature.com
The structural maintenance of chromosome (SMC) complexes—cohesin and condensins—
are crucial for chromosome separation and compaction during cell division. During the …

Three-Dimensional Genome Map of the Filamentous Fungus Penicillium oxalicum

CX Li, L Liu, T Zhang, XM Luo, JX Feng… - Microbiology …, 2022 - Am Soc Microbiol
Higher-order spatial organization of the chromatin in the nucleus plays crucial roles in the
maintenance of cell functions and the regulation of gene expression. Three-dimensional …

Spatial organization of chromosomes leads to heterogeneous chromatin motion and drives the liquid-or gel-like dynamical behavior of chromatin

H Salari, M Di Stefano, D Jost - Genome research, 2022 - genome.cshlp.org
Chromosome organization and dynamics are involved in regulating many fundamental
processes such as gene transcription and DNA repair. Experiments unveiled that chromatin …