[HTML][HTML] Enhancer–promoter specificity in gene transcription: molecular mechanisms and disease associations
MJ Friedman, T Wagner, H Lee… - … & Molecular Medicine, 2024 - nature.com
Although often located at a distance from their target gene promoters, enhancers are the
primary genomic determinants of temporal and spatial transcriptional specificity in …
primary genomic determinants of temporal and spatial transcriptional specificity in …
[HTML][HTML] Function and evolution of the loop extrusion machinery in animals
E Kabirova, A Nurislamov, A Shadskiy… - International Journal of …, 2023 - mdpi.com
Structural maintenance of chromosomes (SMC) complexes are essential proteins found in
genomes of all cellular organisms. Essential functions of these proteins, such as mitotic …
genomes of all cellular organisms. Essential functions of these proteins, such as mitotic …
Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells
Dynamic chromatin behavior plays a critical role in various genome functions. However, it
remains unclear how chromatin behavior changes during interphase, where the nucleus …
remains unclear how chromatin behavior changes during interphase, where the nucleus …
[HTML][HTML] Establishment of dsDNA-dsDNA interactions by the condensin complex
Condensin is a structural maintenance of chromosomes (SMC) complex family member
thought to build mitotic chromosomes by DNA loop extrusion. However, condensin variants …
thought to build mitotic chromosomes by DNA loop extrusion. However, condensin variants …
Auxin-inducible degron system: an efficient protein degradation tool to study protein function
K Phanindhar, RK Mishra - Biotechniques, 2023 - Taylor & Francis
Targeted protein degradation, with its rapid protein depletion kinetics, allows the
measurement of acute changes in the cell. The auxin-inducible degron (AID) system, rapidly …
measurement of acute changes in the cell. The auxin-inducible degron (AID) system, rapidly …
Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast
Underlying higher order chromatin organization are Structural Maintenance of
Chromosomes (SMC) complexes, large protein rings that entrap DNA. The molecular …
Chromosomes (SMC) complexes, large protein rings that entrap DNA. The molecular …
Chromatin behavior in living cells: lessons from single‐nucleosome imaging and tracking
S Ide, S Tamura, K Maeshima - BioEssays, 2022 - Wiley Online Library
Eukaryotic genome DNA is wrapped around core histones and forms a nucleosome
structure. Together with associated proteins and RNAs, these nucleosomes are organized …
structure. Together with associated proteins and RNAs, these nucleosomes are organized …
Condensin I folds the Caenorhabditis elegans genome
M Das, JI Semple, A Haemmerli, V Volodkina… - Nature …, 2024 - nature.com
The structural maintenance of chromosome (SMC) complexes—cohesin and condensins—
are crucial for chromosome separation and compaction during cell division. During the …
are crucial for chromosome separation and compaction during cell division. During the …
Three-Dimensional Genome Map of the Filamentous Fungus Penicillium oxalicum
CX Li, L Liu, T Zhang, XM Luo, JX Feng… - Microbiology …, 2022 - Am Soc Microbiol
Higher-order spatial organization of the chromatin in the nucleus plays crucial roles in the
maintenance of cell functions and the regulation of gene expression. Three-dimensional …
maintenance of cell functions and the regulation of gene expression. Three-dimensional …
Spatial organization of chromosomes leads to heterogeneous chromatin motion and drives the liquid-or gel-like dynamical behavior of chromatin
Chromosome organization and dynamics are involved in regulating many fundamental
processes such as gene transcription and DNA repair. Experiments unveiled that chromatin …
processes such as gene transcription and DNA repair. Experiments unveiled that chromatin …