Determinants of enhancer and promoter activities of regulatory elements

R Andersson, A Sandelin - Nature Reviews Genetics, 2020 - nature.com
The proper activities of enhancers and gene promoters are essential for coordinated
transcription within a cell. Although diverse methodologies have been developed to identify …

Genome regulation by long noncoding RNAs

JL Rinn, HY Chang - Annual review of biochemistry, 2012 - annualreviews.org
The central dogma of gene expression is that DNA is transcribed into messenger RNAs,
which in turn serve as the template for protein synthesis. The discovery of extensive …

The functional role of long non-coding RNA in human carcinomas

EA Gibb, CJ Brown, WL Lam - Molecular cancer, 2011 - Springer
Long non-coding RNAs (lncRNAs) are emerging as new players in the cancer paradigm
demonstrating potential roles in both oncogenic and tumor suppressive pathways. These …

Gateways to the FANTOM5 promoter level mammalian expression atlas

M Lizio, J Harshbarger, H Shimoji, J Severin… - Genome biology, 2015 - Springer
The FANTOM5 project investigates transcription initiation activities in more than 1,000
human and mouse primary cells, cell lines and tissues using CAGE. Based on manual …

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases

M Lizio, I Abugessaisa, S Noguchi, A Kondo… - Nucleic acids …, 2019 - academic.oup.com
The FANTOM web resource (http://fantom. gsc. riken. jp/) was developed to provide easy
access to the data produced by the FANTOM project. It contains the most complete and …

[HTML][HTML] GenBank

DA Benson, K Clark, I Karsch-Mizrachi… - Nucleic acids …, 2015 - ncbi.nlm.nih.gov
Abstract GenBank®(http://www. ncbi. nlm. nih. gov/genbank/) is a comprehensive database
that contains publicly available nucleotide sequences for over 300 000 formally described …

FANTOM5 CAGE profiles of human and mouse samples

S Noguchi, T Arakawa, S Fukuda, M Furuno… - Scientific data, 2017 - nature.com
In the FANTOM5 project, transcription initiation events across the human and mouse
genomes were mapped at a single base-pair resolution and their frequencies were …

Initial sequencing and analysis of the human genome

US DOE Joint Genome Institute: Hawkins Trevor 4 … - Nature, 2001 - nature.com
The human genome holds an extraordinary trove of information about human development,
physiology, medicine and evolution. Here we report the results of an international …

Initial sequencing and comparative analysis of the mouse genome

European Bioinformatics Institute: Birney Ewan 3 … - Nature, 2002 - nature.com
The sequence of the mouse genome is a key informational tool for understanding the
contents of the human genome and a key experimental tool for biomedical research. Here …

GenBank

DA Benson, M Cavanaugh, K Clark… - Nucleic acids …, 2012 - academic.oup.com
Abstract GenBank®(http://www. ncbi. nlm. nih. gov) is a comprehensive database that
contains publicly available nucleotide sequences for almost 260 000 formally described …