Genome-wide sex and gender differences in cancer

CM Lopes-Ramos, J Quackenbush… - Frontiers in oncology, 2020 - frontiersin.org
Despite their known importance in clinical medicine, differences based on sex and gender
are among the least studied factors affecting cancer susceptibility, progression, survival, and …

Ageing hallmarks exhibit organ-specific temporal signatures

N Schaum, B Lehallier, O Hahn, R Pálovics… - Nature, 2020 - nature.com
Ageing is the single greatest cause of disease and death worldwide, and understanding the
associated processes could vastly improve quality of life. Although major categories of …

A reference map of the human binary protein interactome

K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg… - Nature, 2020 - nature.com
Global insights into cellular organization and genome function require comprehensive
understanding of the interactome networks that mediate genotype–phenotype relationships …

[HTML][HTML] Sex differences in gene expression and regulatory networks across 29 human tissues

CM Lopes-Ramos, CY Chen, ML Kuijjer, JN Paulson… - Cell reports, 2020 - cell.com
Sex differences manifest in many diseases and may drive sex-specific therapeutic
responses. To understand the molecular basis of sex differences, we evaluated sex-biased …

A test metric for assessing single-cell RNA-seq batch correction

M Büttner, Z Miao, FA Wolf, SA Teichmann, FJ Theis - Nature methods, 2019 - nature.com
Single-cell transcriptomics is a versatile tool for exploring heterogeneous cell populations,
but as with all genomics experiments, batch effects can hamper data integration and …

Understanding tissue-specific gene regulation

AR Sonawane, J Platig, M Fagny, CY Chen… - Cell reports, 2017 - cell.com
Although all human tissues carry out common processes, tissues are distinguished by gene
expression patterns, implying that distinct regulatory programs control tissue specificity. In …

Network analysis reveals rare disease signatures across multiple levels of biological organization

P Buphamalai, T Kokotovic, V Nagy… - Nature communications, 2021 - nature.com
Rare genetic diseases are typically caused by a single gene defect. Despite this clear
causal relationship between genotype and phenotype, identifying the pathobiological …

[图书][B] Bioinformatics

AD Baxevanis, GD Bader, DS Wishart - 2020 - books.google.com
Praise for the third edition of Bioinformatics" This book is a gem to read and use in practice."—
Briefings in Bioinformatics" This volume has a distinctive, special value as it offers an …

[HTML][HTML] Investigating genes associated with heart failure, atrial fibrillation, and other cardiovascular diseases, and predicting disease using machine learning …

V Venkat, H Abdelhalim, W DeGroat, S Zeeshan… - Genomics, 2023 - Elsevier
Cardiovascular disease (CVD) is the leading cause of mortality and loss of disability
adjusted life years (DALYs) globally. CVDs like Heart Failure (HF) and Atrial Fibrillation (AF) …

Reference transcriptomes of porcine peripheral immune cells created through bulk and single-cell RNA sequencing

J Herrera-Uribe, JE Wiarda, SK Sivasankaran… - Frontiers in …, 2021 - frontiersin.org
Pigs are a valuable human biomedical model and an important protein source supporting
global food security. The transcriptomes of peripheral blood immune cells in pigs were …