Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

M Ravinet, R Faria, RK Butlin, J Galindo… - Journal of …, 2017 - academic.oup.com
Speciation, the evolution of reproductive isolation among populations, is continuous,
complex, and involves multiple, interacting barriers. Until it is complete, the effects of this …

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

TE Cruickshank, MW Hahn - Molecular ecology, 2014 - Wiley Online Library
The metaphor of 'genomic islands of speciation'was first used to describe heterogeneous
differentiation among loci between the genomes of closely related species. The biological …

[HTML][HTML] Ancient hybridization fuels rapid cichlid fish adaptive radiations

JI Meier, DA Marques, S Mwaiko, CE Wagner… - Nature …, 2017 - nature.com
Understanding why some evolutionary lineages generate exceptionally high species
diversity is an important goal in evolutionary biology. Haplochromine cichlid fishes of Africa's …

Stacks: an analysis tool set for population genomics

J Catchen, PA Hohenlohe, S Bassham… - Molecular …, 2013 - Wiley Online Library
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …

Hybridization, introgression, and the nature of species boundaries

RG Harrison, EL Larson - Journal of Heredity, 2014 - academic.oup.com
Species can be defined as populations that are diagnosably distinct, reproductively isolated,
cohesive, or exclusive groups of organisms. Boundaries between species in sympatry are …

A genomic perspective on hybridization and speciation

BA Payseur, LH Rieseberg - Molecular ecology, 2016 - Wiley Online Library
Hybridization among diverging lineages is common in nature. Genomic data provide a
special opportunity to characterize the history of hybridization and the genetic basis of …

Genomics and the origin of species

O Seehausen, RK Butlin, I Keller, CE Wagner… - Nature Reviews …, 2014 - nature.com
Speciation is a fundamental evolutionary process, the knowledge of which is crucial for
understanding the origins of biodiversity. Genomic approaches are an increasingly …

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

DAR Eaton - Bioinformatics, 2014 - academic.oup.com
Motivation: Restriction-site–associated genomic markers are a powerful tool for investigating
evolutionary questions at the population level, but are limited in their utility at deeper …

Genome sequencing and population genomics in non-model organisms

H Ellegren - Trends in ecology & evolution, 2014 - cell.com
High-throughput sequencing technologies are revolutionizing the life sciences. The past 12
months have seen a burst of genome sequences from non-model organisms, in each case …

[HTML][HTML] Genotyping-by-sequencing in ecological and conservation genomics

SR Narum, CA Buerkle, JW Davey, MR Miller… - Molecular …, 2013 - ncbi.nlm.nih.gov
The fields of ecological and conservation genetics have developed greatly in recent
decades through the use of molecular markers to investigate organisms in their natural …