High-throughput studies of biological systems are rapidly accumulating a wealth of'omics'-
scale data. Visualization is a key aspect of both the analysis and understanding of these …

Abstract “Α picture is worth a thousand words.” This widely used adage sums up in a few
words the notion that a successful visual representation of a concept should enable easy …

Escher is a web application for visualizing data on biological pathways. Three key features
make Escher a uniquely effective tool for pathway visualization. First, users can rapidly …

Motivation: High-throughput technologies such as DNA sequencing and microarrays have
created the need for automated annotation of large sets of genes, including whole genomes …

A common challenge in the analysis of genomics data is trying to understand the underlying
phenomenon in the context of all complex interactions taking place on various signaling …

Pathway Tools is a bioinformatics software environment with a broad set of capabilities. The
software provides genome-informatics tools such as a genome browser, sequence …

There is an increasing need to automatically annotate a set of genes or proteins (from
genome sequencing, DNA microarray analysis or protein 2D gel experiments) using …

Pathway Tools is a production-quality software environment for creating a type of model-
organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc …

Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

Changes in transcript levels are assessed by microarray analysis on an individual basis,
essentially resulting in long lists of genes that were found to have significantly changed …