Principles and challenges of genome-wide DNA methylation analysis

PW Laird - Nature Reviews Genetics, 2010 - nature.com
Methylation of cytosine bases in DNA provides a layer of epigenetic control in many
eukaryotes that has important implications for normal biology and disease. Therefore …

DNA hypomethylation in cancer cells

M Ehrlich - Epigenomics, 2009 - Taylor & Francis
DNA hypomethylation was the initial epigenetic abnormality recognized in human tumors.
However, for several decades after its independent discovery by two laboratories in 1983, it …

Distance-based support vector machine to predict DNA N6-methyladenine modification

H Zhang, Q Zou, Y Ju, C Song, D Chen - Current Bioinformatics, 2022 - ingentaconnect.com
Background: DNA N6-methyladenine plays an important role in the restriction-modification
system to isolate invasion from adventive DNA. The shortcomings of the high time …

DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load

H Jung, HS Kim, JY Kim, JM Sun, JS Ahn… - Nature …, 2019 - nature.com
Mitotic cell division increases tumour mutation burden and copy number load, predictive
markers of the clinical benefit of immunotherapy. Cell division correlates also with genomic …

Epigenetic and genetic features of 24 colon cancer cell lines

D Ahmed, PW Eide, IA Eilertsen, SA Danielsen… - Oncogenesis, 2013 - nature.com
Cell lines are invaluable biomedical research tools, and recent literature has emphasized
the importance of genotype authentication and characterization. In the present study, 24 out …

Epigenetic priming enhances antitumor immunity in platinum-resistant ovarian cancer

S Chen, P Xie, M Cowan, H Huang… - The Journal of …, 2022 - Am Soc Clin Investig
Background Immune checkpoint inhibitors (ICIs) have modest activity in ovarian cancer
(OC). To augment their activity, we used priming with the hypomethylating agent …

DNA methylation of the first exon is tightly linked to transcriptional silencing

F Brenet, M Moh, P Funk, E Feierstein, AJ Viale… - PloS one, 2011 - journals.plos.org
Tissue specific patterns of methylated cytosine residues vary with age, can be altered by
environmental factors, and are often abnormal in human disease yet the cellular …

CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer

DJ Weisenberger, KD Siegmund, M Campan… - Nature …, 2006 - nature.com
Aberrant DNA methylation of CpG islands has been widely observed in human colorectal
tumors and is associated with gene silencing when it occurs in promoter areas. A subset of …

Environmental epigenetics

V Bollati, A Baccarelli - Heredity, 2010 - nature.com
Epigenetics investigates heritable changes in gene expression that occur without changes
in DNA sequence. Several epigenetic mechanisms, including DNA methylation and histone …

Environmental chemical exposures and human epigenetics

L Hou, X Zhang, D Wang… - International journal of …, 2012 - academic.oup.com
Every year more than 13 million deaths worldwide are due to environmental pollutants, and
approximately 24% of diseases are caused by environmental exposures that might be …