The fine-scale recombination rate variation and associations with genomic features in a butterfly

AP i Torres, L Höök, K Näsvall, D Shipilina… - Genome …, 2023 - genome.cshlp.org
Recombination is a key molecular mechanism that has profound implications on both micro-
and macroevolutionary processes. However, the determinants of recombination rate …

Keeping it safe: control of meiotic chromosome breakage

AR Raghavan, A Hochwagen - Trends in Genetics, 2024 - cell.com
Meiotic cells introduce numerous programmed DNA double-strand breaks (DSBs) into their
genome to stimulate crossover recombination. DSB numbers must be high enough to …

Investigating open reading frames in known and novel transcripts using ORFanage

A Varabyou, B Erdogdu, SL Salzberg… - Nature computational …, 2023 - nature.com
ORFanage is a system designed to assign open reading frames (ORFs) to known and novel
gene transcripts while maximizing similarity to annotated proteins. The primary intended use …

Identifying crossovers and shared genetic material in whole genome sequencing data from families

K Paskov, B Chrisman, N Stockham… - Genome …, 2023 - genome.cshlp.org
Large, whole-genome sequencing (WGS) data sets containing families provide an important
opportunity to identify crossovers and shared genetic material in siblings. However, the high …

Novel Insights into the Landscape of Crossover and Noncrossover Events in Rhesus Macaques (Macaca mulatta)

CJ Versoza, S Weiss, R Johal, B La Rosa… - Genome biology and …, 2024 - academic.oup.com
Meiotic recombination landscapes differ greatly between distantly and closely related taxa,
populations, individuals, sexes, and even within genomes; however, the factors driving this …

[HTML][HTML] Genetic regulatory effects in response to a high-cholesterol, high-fat diet in baboons

W Lin, JD Wall, G Li, D Newman, Y Yang, M Abney… - Cell Genomics, 2024 - cell.com
Steady-state expression quantitative trait loci (eQTLs) explain only a fraction of disease-
associated loci identified through genome-wide association studies (GWASs), while eQTLs …

A pedigree-based map of crossovers and non-crossovers in aye-ayes (Daubentonia madagascariensis)

CJ Versoza, A Lloret-Villas, JD Jensen, SP Pfeifer - BioRxiv, 2024 - biorxiv.org
Gaining a better understanding of rates and patterns of meiotic recombination is crucial for
improving evolutionary genomic modelling, with applications ranging from demographic to …

Global and local ancestry estimation in a captive baboon colony

C Kendall, J Robinson, G Debortoli… - Plos one, 2024 - journals.plos.org
The last couple of decades have highlighted the importance of studying hybridization,
particularly among primate species, as it allows us to better understand our own …

NCOurd: modelling length distributions of NCO events and gene conversion tracts

MT Hardarson, G Palsson, BV Halldorsson - Bioinformatics, 2023 - academic.oup.com
Motivation Meiotic recombination is the main driving force of human genetic diversity, along
with mutations. Recombinations split into crossovers, separating large chromosomal regions …

Has recombination changed during the recent evolution of the guppy Y chromosome?

D Charlesworth, S Qiu, R Bergero, J Gardner… - Genetics, 2024 - academic.oup.com
Genome sequencing and genetic mapping of molecular markers have demonstrated nearly
complete Y-linkage across much of the guppy (Poecilia reticulata) XY chromosome pair …