Self-Assembly of Amyloid-Beta (Aβ) Peptides from Solution to Near In Vivo Conditions
PH Nguyen, F Sterpone… - The Journal of Physical …, 2022 - ACS Publications
Understanding the atomistic resolution changes during the self-assembly of amyloid
peptides or proteins is important to develop compounds or conditions to alter the …
peptides or proteins is important to develop compounds or conditions to alter the …
Role of conformational dynamics in pathogenic protein aggregation
The accumulation of pathogenic protein oligomers and aggregates is associated with
several devastating amyloid diseases. As protein aggregation is a multi-step nucleation …
several devastating amyloid diseases. As protein aggregation is a multi-step nucleation …
Production of Distinct Fibrillar, Oligomeric, and Other Aggregation States from Network Models of Multibody Interaction
Protein aggregation can produce a wide range of states, ranging from fibrillar structures and
oligomers to unstructured and semistructured gel phases. Recent work has shown that many …
oligomers to unstructured and semistructured gel phases. Recent work has shown that many …
Evolution of large Aβ16–22 aggregates at atomic details and potential of mean force associated to peptide unbinding and fragmentation events
Atomic characterization of large nonfibrillar aggregates of amyloid polypeptides cannot be
determined by experimental means. Starting from β‐rich aggregates of Y and elongated …
determined by experimental means. Starting from β‐rich aggregates of Y and elongated …
Structure-Based Protein Assembly Simulations Including Various Binding Sites and Conformations
LJ Walter, PK Quoika, M Zacharias - Journal of Chemical …, 2024 - ACS Publications
Many biological functions are mediated by large complexes formed by multiple proteins and
other cellular macromolecules. Recent progress in experimental structure determination, as …
other cellular macromolecules. Recent progress in experimental structure determination, as …
Multi-eGO: Model Improvements toward the Study of Complex Self-Assembly Processes
F Bačić Toplek, E Scalone, B Stegani… - Journal of Chemical …, 2023 - ACS Publications
Structure-based models have been instrumental in simulating protein folding and
suggesting hypotheses about the mechanisms involved. Nowadays, at least for fast-folding …
suggesting hypotheses about the mechanisms involved. Nowadays, at least for fast-folding …
Exploring the misfolding and self-assembly mechanism of TTR (105–115) peptides by all-atom molecular dynamics simulation
Y Zhang, Y Zhu, H Yue, Q Zhao, H Li - Frontiers in Molecular …, 2022 - frontiersin.org
Pathological aggregation of essentially dissociative Transthyretin (TTR) monomers protein,
driven by misfolded and self-interaction, is connected with Amyloid Transthyretin …
driven by misfolded and self-interaction, is connected with Amyloid Transthyretin …
Probing the structure–function relationship of proteins with molecular modeling
L Boyens-Thiele, AK Buell, C Schmitt… - Functionality of Plant …, 2024 - Elsevier
Proteins are complex biopolymers responsible for key functions in plant, microbial, fungal,
and animal organisms. Due to the variability induced by the chemical composition of the 20 …
and animal organisms. Due to the variability induced by the chemical composition of the 20 …
The Scope and Limitations of In Vivo and In Silico Models of Cardiac Amyloidosis
S Morozkina, P Snetkov, M Uspenskaya - Engineering Proceedings, 2023 - mdpi.com
Amyloidosis is a systemic disease, leading to the disfunction of many organs. There are
several clinical and morphological forms of amyloidosis based on the organ-specific nature …
several clinical and morphological forms of amyloidosis based on the organ-specific nature …
Estimation of ligand binding free energy using multi-eGO.
The computational study of the binding of a ligand to a target protein provides mechanistic
insight into the molecular determinants of this process and can improve the success rate of …
insight into the molecular determinants of this process and can improve the success rate of …