Worms and gills, plates and spines: the evolutionary origins and incredible disparity of deuterostomes revealed by fossils, genes, and development

K Nanglu, SR Cole, DF Wright, C Souto - Biological Reviews, 2023 - Wiley Online Library
Deuterostomes are the major division of animal life which includes sea stars, acorn worms,
and humans, among a wide variety of ecologically and morphologically disparate taxa …

[HTML][HTML] Phylogenomic insights into animal evolution

MJ Telford, GE Budd, H Philippe - Current Biology, 2015 - cell.com
Animals make up only a small fraction of the eukaryotic tree of life, yet, from our vantage
point as members of the animal kingdom, the evolution of the bewildering diversity of animal …

Using PhyloSuite for molecular phylogeny and tree‐based analyses

CY Xiang, F Gao, I Jakovlić, HP Lei, Y Hu, H Zhang… - Imeta, 2023 - Wiley Online Library
Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced
researchers, conquering the large number of software programs required for a multilocus …

Error, signal, and the placement of Ctenophora sister to all other animals

NV Whelan, KM Kocot, LL Moroz… - Proceedings of the …, 2015 - National Acad Sciences
Elucidating relationships among early animal lineages has been difficult, and recent
phylogenomic analyses place Ctenophora sister to all other extant animals, contrary to the …

[HTML][HTML] The sea cucumber genome provides insights into morphological evolution and visceral regeneration

X Zhang, L Sun, J Yuan, Y Sun, Y Gao, L Zhang… - PLoS …, 2017 - journals.plos.org
Apart from sharing common ancestry with chordates, sea cucumbers exhibit a unique
morphology and exceptional regenerative capacity. Here we present the complete genome …

Phylogenomic subsampling and the search for phylogenetically reliable loci

N Mongiardino Koch - Molecular biology and evolution, 2021 - academic.oup.com
Phylogenomic subsampling is a procedure by which small sets of loci are selected from
large genome-scale data sets and used for phylogenetic inference. This step is often …

[HTML][HTML] Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor

AK Redmond, D Casey, MK Gundappa… - Nature …, 2023 - nature.com
Whole genome duplication (WGD) is a dramatic evolutionary event generating many new
genes and which may play a role in survival through mass extinctions. Paddlefish and …

Molecular phylogeny of extant Holothuroidea (Echinodermata)

AK Miller, AM Kerr, G Paulay, M Reich… - Molecular Phylogenetics …, 2017 - Elsevier
Sea cucumbers (Holothuroidea) are a morphologically diverse, ecologically important, and
economically valued clade of echinoderms; however, the understanding of the overall …

The evolutionary history of ferns inferred from 25 low‐copy nuclear genes

CJ Rothfels, FW Li, EM Sigel, L Huiet… - American Journal of …, 2015 - Wiley Online Library
• Premise of the study: Understanding fern (monilophyte) phylogeny and its evolutionary
timescale is critical for broad investigations of the evolution of land plants, and for providing …

A practical guide to design and assess a phylogenomic study

J Lozano-Fernandez - Genome Biology and Evolution, 2022 - academic.oup.com
Over the last decade, molecular systematics has undergone a change of paradigm as high-
throughput sequencing now makes it possible to reconstruct evolutionary relationships …