Alternative splicing and related RNA binding proteins in human health and disease
Y Tao, Q Zhang, H Wang, X Yang, H Mu - Signal Transduction and …, 2024 - nature.com
Alternative splicing (AS) serves as a pivotal mechanism in transcriptional regulation,
engendering transcript diversity, and modifications in protein structure and functionality …
engendering transcript diversity, and modifications in protein structure and functionality …
From computational models of the splicing code to regulatory mechanisms and therapeutic implications
C Capitanchik, OG Wilkins, N Wagner… - Nature Reviews …, 2024 - nature.com
Since the discovery of RNA splicing and its role in gene expression, researchers have
sought a set of rules, an algorithm or a computational model that could predict the splice …
sought a set of rules, an algorithm or a computational model that could predict the splice …
Pangenome-genotyped structural variation improves molecular phenotype mapping in cattle
Expression and splicing quantitative trait loci (e/sQTL) are large contributors to phenotypic
variability. Achieving sufficient statistical power for e/sQTL mapping requires large cohorts …
variability. Achieving sufficient statistical power for e/sQTL mapping requires large cohorts …
[HTML][HTML] Improved detection of aberrant splicing with FRASER 2.0 and the intron Jaccard index
Detection of aberrantly spliced genes is an important step in RNA-seq-based rare-disease
diagnostics. We recently developed FRASER, a denoising autoencoder-based method that …
diagnostics. We recently developed FRASER, a denoising autoencoder-based method that …
Benchmarking splice variant prediction algorithms using massively parallel splicing assays
C Smith, JO Kitzman - Genome Biology, 2023 - Springer
Background Variants that disrupt mRNA splicing account for a sizable fraction of the
pathogenic burden in many genetic disorders, but identifying splice-disruptive variants …
pathogenic burden in many genetic disorders, but identifying splice-disruptive variants …
[HTML][HTML] X-linked hypophosphatemia caused by a deep intronic variant in PHEX identified by PCR-based RNA analysis of urine-derived cells
C Grimbly, K Ludwig, Z Wu, O Caluseriu, E Rosolowsky… - Bone, 2023 - Elsevier
X-linked hypophosphatemia (XLH) is caused by dominant inactivating mutations in the
phosphate regulating endopeptidase homology, X-linked (PHEX), resulting in elevated …
phosphate regulating endopeptidase homology, X-linked (PHEX), resulting in elevated …
Integration of variant annotations using deep set networks boosts rare variant association testing
Rare genetic variants can have strong effects on phenotypes, yet accounting for rare
variants in genetic analyses is statistically challenging due to the limited number of allele …
variants in genetic analyses is statistically challenging due to the limited number of allele …
Computational prediction of human deep intronic variation
P Barbosa, R Savisaar, M Carmo-Fonseca… - …, 2023 - academic.oup.com
Background The adoption of whole-genome sequencing in genetic screens has facilitated
the detection of genetic variation in the intronic regions of genes, far from annotated splice …
the detection of genetic variation in the intronic regions of genes, far from annotated splice …
A deep intronic PKHD1 variant identified by SpliceAI in a deceased neonate with autosomal recessive polycystic kidney disease
F Richter, KD Rutherford, AJ Cooke, M Meshkati… - American Journal of …, 2024 - Elsevier
The etiologies of newborn deaths in neonatal intensive care units usually remain unknown,
even after genetic testing. Whole-genome sequencing, combined with artificial intelligence …
even after genetic testing. Whole-genome sequencing, combined with artificial intelligence …
Next-generation sequencing and bioinformatics in rare movement disorders
M Zech, J Winkelmann - Nature Reviews Neurology, 2024 - nature.com
The ability to sequence entire exomes and genomes has revolutionized molecular testing in
rare movement disorders, and genomic sequencing is becoming an integral part of routine …
rare movement disorders, and genomic sequencing is becoming an integral part of routine …