[HTML][HTML] Omics technologies for improved diagnosis and treatment of colorectal cancer: Technical advancement and major perspectives

N Dalal, R Jalandra, M Sharma, H Prakash… - Biomedicine & …, 2020 - Elsevier
Colorectal cancer (CRC) ranks third among the most commonly occurring cancers
worldwide, and it causes half a million deaths annually. Alongside mechanistic study for …

A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines

Y Chen, NM Davidson, YK Wan, H Patel, F Yao… - BioRxiv, 2021 - biorxiv.org
The human genome contains more than 200,000 gene isoforms. However, different isoforms
can be highly similar, and with an average length of 1.5 kb remain difficult to study with short …

Role of adaptin protein complexes in intracellular trafficking and their impact on diseases

J Shin, A Nile, JW Oh - Bioengineered, 2021 - Taylor & Francis
Adaptin proteins (APs) play a crucial role in intracellular cell trafficking. The 'classical'role of
APs is carried out by AP1‒3, which bind to clathrin, cargo, and accessory proteins …

JAFFAL: detecting fusion genes with long-read transcriptome sequencing

NM Davidson, Y Chen, T Sadras, GL Ryland… - Genome biology, 2022 - Springer
In cancer, fusions are important diagnostic markers and targets for therapy. Long-read
transcriptome sequencing allows the discovery of fusions with their full-length isoform …

Unscrambling the genomic chaos of osteosarcoma reveals extensive transcript fusion, recurrent rearrangements and frequent novel TP53 aberrations

S Lorenz, T Barøy, J Sun, T Nome, D Vodák… - …, 2015 - pmc.ncbi.nlm.nih.gov
In contrast to many other sarcoma subtypes, the chaotic karyotypes of osteosarcoma have
precluded the identification of pathognomonic translocations. We here report hundreds of …

Inhibition of breast cancer cell migration by activation of cAMP signaling

H Dong, KP Claffey, S Brocke, PM Epstein - Breast cancer research and …, 2015 - Springer
Almost all deaths from breast cancer arise from metastasis of the transformed cells to other
sites in the body. Hence, uncovering a means of inhibiting breast cancer cell migration …

RNA sequencing and somatic mutation status of adrenocortical tumors: novel pathogenetic insights

G Di Dalmazi, B Altieri, C Scholz… - The Journal of …, 2020 - academic.oup.com
Context Pathogenesis of autonomous steroid secretion and adrenocortical tumorigenesis
remains partially obscure. Objective To investigate the relationship between transcriptome …

Pan-cancer analysis reveals the diverse landscape of novel sense and antisense fusion transcripts

NN Vellichirammal, A Albahrani, JK Banwait… - … Therapy-Nucleic Acids, 2020 - cell.com
Gene fusions that contribute to oncogenicity can be explored for identifying cancer
biomarkers and potential drug targets. To investigate the nature and distribution of fusion …

COMMD10 inhibits tumor progression and induces apoptosis by blocking NF‐κB signal and values up BCLC staging in predicting overall survival in hepatocellular …

M Yang, X Wu, L Li, S Li, N Li, M Mao… - Clinical and …, 2021 - Wiley Online Library
Background Hepatocellular carcinoma (HCC) is the third leading cause of cancer mortality
worldwide. Currently, there is limited knowledge of dysregulation of cellular proliferation and …

Computational analysis of sense-antisense chimeric transcripts reveals their potential regulatory features and the landscape of expression in human cells

S Mukherjee, R Detroja, D Balamurali… - NAR Genomics and …, 2021 - academic.oup.com
Many human genes are transcribed from both strands and produce sense-antisense gene
pairs. Sense-antisense (SAS) chimeric transcripts are produced upon the coalescing of …