Metagenomics: genomic analysis of microbial communities
CS Riesenfeld, PD Schloss, J Handelsman - Annu. Rev. Genet., 2004 - annualreviews.org
▪ Abstract Uncultured microorganisms comprise the majority of the planet's biological
diversity. Microorganisms represent two of the three domains of life and contain vast …
diversity. Microorganisms represent two of the three domains of life and contain vast …
The diversity of small eukaryotic phytoplankton (≤ 3 μm) in marine ecosystems
Small cells dominate photosynthetic biomass and primary production in many marine
ecosystems. Traditionally, picoplankton refers to cells≤ 2 μm. Here we extend the size …
ecosystems. Traditionally, picoplankton refers to cells≤ 2 μm. Here we extend the size …
Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
P Flombaum, JL Gallegos… - Proceedings of the …, 2013 - National Acad Sciences
The Cyanobacteria Prochlorococcus and Synechococcus account for a substantial fraction
of marine primary production. Here, we present quantitative niche models for these lineages …
of marine primary production. Here, we present quantitative niche models for these lineages …
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background Likelihood-based phylogenetic inference is generally considered to be the most
reliable classification method for unknown sequences. However, traditional likelihood-based …
reliable classification method for unknown sequences. However, traditional likelihood-based …
Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
Abstract A quantitative PCR (QPCR) assay based on the use of SYBR Green I was
developed to assess the abundance of specific groups of picoeukaryotes in marine waters …
developed to assess the abundance of specific groups of picoeukaryotes in marine waters …
Transfer of photosynthesis genes to and from Prochlorococcus viruses
Comparative genomics gives us a new window into phage–host interactions and their
evolutionary implications. Here we report the presence of genes central to oxygenic …
evolutionary implications. Here we report the presence of genes central to oxygenic …
Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts
Cyanophages (cyanobacterial viruses) are important agents of horizontal gene transfer
among marine cyanobacteria, the numerically dominant photosynthetic organisms in the …
among marine cyanobacteria, the numerically dominant photosynthetic organisms in the …
Phyto REF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy
Photosynthetic eukaryotes have a critical role as the main producers in most ecosystems of
the biosphere. The ongoing environmental metabarcoding revolution opens the perspective …
the biosphere. The ongoing environmental metabarcoding revolution opens the perspective …
Phylogeny and taxonomy of Synechococcus–like cyanobacteria
J Komarek, JR Johansen, J Smarda, O Strunecký - Fottea, 2020 - collected.jcu.edu
Unicellular cyanobacteria constitute a substantial, ecologically important part of freshwater
and marine microflora. Solitary, elongated cyanobacterial cells without apparent slime …
and marine microflora. Solitary, elongated cyanobacterial cells without apparent slime …
Ecology of viruses in soils: past, present and future perspectives
M Kimura, ZJ Jia, N Nakayama… - Soil Science and Plant …, 2008 - Taylor & Francis
Viruses play important roles in biogeochemical nutrient cycles and act as genomic
reservoirs in marine and freshwater environments, the understanding of which brought …
reservoirs in marine and freshwater environments, the understanding of which brought …