Current trends in computer aided drug design and a highlight of drugs discovered via computational techniques: A review

VT Sabe, T Ntombela, LA Jhamba… - European Journal of …, 2021 - Elsevier
Computer-aided drug design (CADD) is one of the pivotal approaches to contemporary pre-
clinical drug discovery, and various computational techniques and software programs are …

Amyloid oligomers: A joint experimental/computational perspective on Alzheimer's disease, Parkinson's disease, type II diabetes, and amyotrophic lateral sclerosis

PH Nguyen, A Ramamoorthy, BR Sahoo… - Chemical …, 2021 - ACS Publications
Protein misfolding and aggregation is observed in many amyloidogenic diseases affecting
either the central nervous system or a variety of peripheral tissues. Structural and dynamic …

AutoDock Vina 1.2. 0: New docking methods, expanded force field, and python bindings

J Eberhardt, D Santos-Martins… - Journal of chemical …, 2021 - ACS Publications
AutoDock Vina is arguably one of the fastest and most widely used open-source programs
for molecular docking. However, compared to other programs in the AutoDock Suite, it lacks …

GNINA 1.0: molecular docking with deep learning

AT McNutt, P Francoeur, R Aggarwal, T Masuda… - Journal of …, 2021 - Springer
Molecular docking computationally predicts the conformation of a small molecule when
binding to a receptor. Scoring functions are a vital piece of any molecular docking pipeline …

Accelerating AutoDock4 with GPUs and Gradient-Based Local Search

D Santos-Martins, L Solis-Vasquez… - Journal of chemical …, 2021 - ACS Publications
AutoDock4 is a widely used program for docking small molecules to macromolecular targets.
It describes ligand–receptor interactions using a physics-inspired scoring function that has …

Computational determination of potential inhibitors of SARS-CoV-2 main protease

ST Ngo, N Quynh Anh Pham, L Thi Le… - Journal of chemical …, 2020 - ACS Publications
The novel coronavirus (SARS-CoV-2) has infected several million people and caused
thousands of deaths worldwide since December 2019. As the disease is spreading rapidly …

Benchmark of popular free energy approaches revealing the inhibitors binding to SARS-CoV-2 Mpro

ST Ngo, NM Tam, MQ Pham… - Journal of Chemical …, 2021 - ACS Publications
The COVID-19 pandemic has killed millions of people worldwide since its outbreak in
December 2019. The pandemic is caused by the SARS-CoV-2 virus whose main protease …

Acetylcholinesterase inhibitory activities of essential oils from Vietnamese traditional medicinal plants

NH Hung, PM Quan, P Satyal, DN Dai, VV Hoa… - Molecules, 2022 - mdpi.com
Essential oils are promising as environmentally friendly and safe sources of pesticides for
human use. Furthermore, they are also of interest as aromatherapeutic agents in the …

[HTML][HTML] Deciphering the pharmacological mechanisms of Scutellaria baicalensis Georgi on oral leukoplakia by combining network pharmacology, molecular docking …

F Hou, Z Yu, YH Cheng, Y Liu, S Liang, F Zhang - Phytomedicine, 2022 - Elsevier
Background Oral leukoplakia (OLK), an uncharacterized pathological condition that occurs
as a white patch in the oral mucosa, is the most common precancerous condition. Scutellaria …

[HTML][HTML] Molecular modeling and DFT studies of diazenylphenyl derivatives as a potential HBV and HCV antiviral agents

JA Agwupuye, H Louis, TE Gber, I Ahmad… - Chemical Physics …, 2022 - Elsevier
The need for novel antiviral drug particularly for hepatitis B (HBV) and C (HCV) virus cannot
be over emphasized hence, this work focuses on the stability and intermolecular interaction …