The role of chromatin loop extrusion in antibody diversification

Y Zhang, X Zhang, HQ Dai, H Hu, FW Alt - Nature Reviews Immunology, 2022 - nature.com
Cohesin mediates chromatin loop formation across the genome by extruding chromatin
between convergently oriented CTCF-binding elements. Recent studies indicate that …

Structural insights into the evolution of the RAG recombinase

C Liu, Y Zhang, CC Liu, DG Schatz - Nature Reviews Immunology, 2022 - nature.com
Adaptive immunity in jawed vertebrates relies on the assembly of antigen receptor genes by
the recombination activating gene 1 (RAG1)–RAG2 (collectively RAG) recombinase in a …

Terahertz wave accelerates DNA unwinding: A molecular dynamics simulation study

K Wu, C Qi, Z Zhu, C Wang, B Song… - The journal of physical …, 2020 - ACS Publications
Unwinding the double helix of the DNA molecule is the basis of gene duplication and gene
editing, and the acceleration of this unwinding process is crucial to the rapid detection of …

Transposon molecular domestication and the evolution of the RAG recombinase

Y Zhang, TC Cheng, G Huang, Q Lu, MD Surleac… - Nature, 2019 - nature.com
Domestication of a transposon (a DNA sequence that can change its position in a genome)
to give rise to the RAG1–RAG2 recombinase (RAG) and V (D) J recombination, which …

The recent advances in non-homologous end-joining through the lens of lymphocyte development

XS Wang, BJ Lee, S Zha - DNA repair, 2020 - Elsevier
Lymphocyte development requires ordered assembly and subsequent modifications of the
antigen receptor genes through V (D) J recombination and Immunoglobulin class switch …

RAG2 abolishes RAG1 aggregation to facilitate V (D) J recombination

T Gan, Y Wang, Y Liu, DG Schatz, J Hu - Cell reports, 2021 - cell.com
RAG1 and RAG2 form a tetramer nuclease to initiate V (D) J recombination in developing T
and B lymphocytes. The RAG1 protein evolves from a transposon ancestor and possesses …

RAG chromatin scanning during V (D) J recombination and chromatin loop extrusion are related processes

SG Lin, Z Ba, FW Alt, Y Zhang - Advances in immunology, 2018 - Elsevier
An effective adaptive immune system depends on the ability of developing B and T cells to
generate diverse immunoglobulin (Ig) and T cell receptor repertoires, respectively. Such …

[PDF][PDF] Read between the lines: diversity of nontranslational selection pressures on local codon usage

M Callens, L Pradier, M Finnegan… - Genome Biology and …, 2021 - academic.oup.com
Protein coding genes can contain specific motifs within their nucleotide sequence that
function as a signal for various biological pathways. The presence of such sequence motifs …

Extreme emission seen from γ-ray bursts

B Zhang - 2019 - nature.com
Extreme emission seen from γ-ray bursts Skip to main content Thank you for visiting nature.com.
You are using a browser version with limited support for CSS. To obtain the best experience …

Structures of ISCth4 transpososomes reveal the role of asymmetry in copy‐out/paste‐in DNA transposition

D Kosek, AB Hickman, R Ghirlando, S He… - The EMBO journal, 2021 - embopress.org
Copy‐out/paste‐in transposition is a major bacterial DNA mobility pathway. It contributes
significantly to the emergence of antibiotic resistance, often by upregulating expression of …