Classical electrostatics in biology and chemistry
B Honig, A Nicholls - Science, 1995 - science.org
A major revival in the use of classical electrostatics as an approach to the study of charged
and polar molecules in aqueous solution has been made possible through the development …
and polar molecules in aqueous solution has been made possible through the development …
The Poisson–Boltzmann equation for biomolecular electrostatics: a tool for structural biology
Electrostatics plays a fundamental role in virtually all processes involving biomolecules in
solution. The Poisson–Boltzmann equation constitutes one of the most fundamental …
solution. The Poisson–Boltzmann equation constitutes one of the most fundamental …
Combined molecular mechanical and continuum solvent approach (MM-PBSA/GBSA) to predict ligand binding
I Massova, PA Kollman - Perspectives in drug discovery and design, 2000 - Springer
Significant progress has been achieved in computational methods to treat solvent effects in
recent years. Among various techniques, the continuum solvent approach appears to be …
recent years. Among various techniques, the continuum solvent approach appears to be …
Classical electrostatics for biomolecular simulations
Classical atomistic simulations, also known as molecular mechanics simulations, use simple
potential-energy functions to model molecular systems at the atomic level. In this …
potential-energy functions to model molecular systems at the atomic level. In this …
A smooth permittivity function for Poisson–Boltzmann solvation methods
JA Grant, BT Pickup, A Nicholls - Journal of computational …, 2001 - Wiley Online Library
This work introduces a continuous smooth permittivity function into Poisson–Boltzmann
techniques for continuum approaches to modeling the solvation of small molecules and …
techniques for continuum approaches to modeling the solvation of small molecules and …
An object-oriented programming suite for electrostatic effects in biological molecules An experience report on the MEAD project
D Bashford - International Conference on Computing in Object …, 1997 - Springer
We have developed a set of object-oriented classes and programs in C++ that implement
molecular electrostatic models that can be described by the term, M acroscopic E …
molecular electrostatic models that can be described by the term, M acroscopic E …
Numerical solution of the nonlinear Poisson–Boltzmann equation: developing more robust and efficient methods
MJ Holst, F Saied - Journal of computational chemistry, 1995 - Wiley Online Library
We present a robust and efficient numerical method for solution of the nonlinear Poisson‐
Boltzmann equation arising in molecular biophysics. The equation is discretized with the box …
Boltzmann equation arising in molecular biophysics. The equation is discretized with the box …
[PDF][PDF] Electrostatic models for computing protonation and redox equilibria in proteins
GM Ullmann, EW Knapp - European Biophysics Journal, 1999 - bcmb.uni-bayreuth.de
Electrostatic interactions are the most relevant for understanding biochemical systems. Acid-
base and redox reactions create or destroy unit charges in biomolecules and can thus be …
base and redox reactions create or destroy unit charges in biomolecules and can thus be …
Bovine β-lactoglobulin is dimeric under imitative physiological conditions: dissociation equilibrium and rate constants over the pH range of 2.5–7.5
D Mercadante, LD Melton, GE Norris, TS Loo… - Biophysical …, 2012 - cell.com
The oligomerization of β-lactoglobulin (βLg) has been studied extensively, but with
somewhat contradictory results. Using analytical ultracentrifugation in both sedimentation …
somewhat contradictory results. Using analytical ultracentrifugation in both sedimentation …
Theory of electrostatic interactions in macromolecules
MK Gilson - Current opinion in structural biology, 1995 - Elsevier
In the past year, substantial progress has been made in the modeling of electrostatic
interactions in biomolecules. This review highlights advances in the following areas: first, the …
interactions in biomolecules. This review highlights advances in the following areas: first, the …