Genomics of evolutionary novelty in hybrids and polyploids

G Nieto Feliner, J Casacuberta, JF Wendel - Frontiers in genetics, 2020 - frontiersin.org
It has long been recognized that hybridization and polyploidy are prominent processes in
plant evolution. Although classically recognized as significant in speciation and adaptation …

Polyploidy, the nucleotype, and novelty: the impact of genome doubling on the biology of the cell

JJ Doyle, JE Coate - International Journal of Plant Sciences, 2019 - journals.uchicago.edu
Polyploidy is a key mechanism of genome evolution and speciation, particularly in plants.
Many aspects of polyploidy have been elucidated with the tools that have become available …

Cytonuclear genetic incompatibilities in plant speciation

Z Postel, P Touzet - Plants, 2020 - mdpi.com
Due to the endosymbiotic origin of organelles, a pattern of coevolution and coadaptation
between organellar and nuclear genomes is required for proper cell function. In this review …

Defining coalescent genes: theory meets practice in organelle phylogenomics

JJ Doyle - Systematic biology, 2022 - academic.oup.com
The species tree paradigm that dominates current molecular systematic practice infers
species trees from collections of sequences under assumptions of the multispecies …

Organellar transcripts dominate the cellular mRNA pool across plants of varying ploidy levels

ES Forsythe, CE Grover, ER Miller… - Proceedings of the …, 2022 - National Acad Sciences
Mitochondrial and plastid functions depend on coordinated expression of proteins encoded
by genomic compartments that have radical differences in copy number of organellar and …

Decoupling subgenomes within hybrid lavandin provide new insights into speciation and monoterpenoid diversification of Lavandula

J Li, H Li, Y Wang, W Zhang, D Wang… - Plant Biotechnology …, 2023 - Wiley Online Library
Polyploidization and transposon elements contribute to shape plant genome diversity and
secondary metabolic variation in some edible crops. However, the specific contribution of …

Genomic mosaicism due to homoeologous exchange generates extensive phenotypic diversity in nascent allopolyploids

Y Wu, F Lin, Y Zhou, J Wang, S Sun… - National Science …, 2021 - academic.oup.com
Allopolyploidy is an important process in plant speciation, yet newly formed allopolyploid
species typically suffer from extreme genetic bottlenecks. One escape from this impasse …

Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus

KA Bird, CE Niederhuth, S Ou, M Gehan… - New …, 2021 - Wiley Online Library
Allopolyploidisation merges evolutionarily distinct parental genomes (subgenomes) into a
single nucleus. A frequent observation is that one subgenome is 'dominant'over the other …

A genome resource for Acacia, Australia's largest plant genus

TGB McLay, DJ Murphy, GD Holmes, S Mathews… - PloS one, 2022 - journals.plos.org
Acacia (Leguminosae, Caesalpinioideae, mimosoid clade) is the largest and most
widespread genus of plants in the Australian flora, occupying and dominating a diverse …

Nuclear–cytoplasmic balance: whole genome duplications induce elevated organellar genome copy number

M Fernandes Gyorfy, ER Miller, JL Conover… - The Plant …, 2021 - Wiley Online Library
The plant genome is partitioned across three distinct subcellular compartments: the nucleus,
mitochondria, and plastids. Successful coordination of gene expression among these …