DNA methylation analysis: choosing the right method

S Kurdyukov, M Bullock - Biology, 2016 - mdpi.com
In the burgeoning field of epigenetics, there are several methods available to determine the
methylation status of DNA samples. However, choosing the method that is best suited to …

MHC and Evolution in Teleosts

U Grimholt - Biology, 2016 - mdpi.com
Major histocompatibility complex (MHC) molecules are key players in initiating immune
responses towards invading pathogens. Both MHC class I and class II genes are present in …

Lactate-mediated epigenetic reprogramming regulates formation of human pancreatic cancer-associated fibroblasts

TD Bhagat, D Von Ahrens, M Dawlaty, Y Zou… - Elife, 2019 - elifesciences.org
Even though pancreatic ductal adenocarcinoma (PDAC) is associated with fibrotic stroma,
the molecular pathways regulating the formation of cancer associated fibroblasts (CAFs) are …

Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes

JP Reddington, SM Perricone, CE Nestor… - Genome biology, 2013 - Springer
Background DNA methylation and the Polycomb repression system are epigenetic
mechanisms that play important roles in maintaining transcriptional repression. Recent …

Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma

W Wu, TD Bhagat, X Yang, JH Song, Y Cheng… - Gastroenterology, 2013 - Elsevier
BACKGROUND & AIMS: Alterations in methylation of protein-coding genes are associated
with Barrett's esophagus (BE) and esophageal adenocarcinoma (EAC). Dysregulation of …

Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells

L Pirola, A Balcerczyk, RW Tothill, I Haviv… - Genome …, 2011 - genome.cshlp.org
Emerging evidence suggests that poor glycemic control mediates post-translational
modifications to the H3 histone tail. We are only beginning to understand the dynamic role of …

Whole-genome bisulfite sequencing with improved accuracy and cost

M Suzuki, W Liao, F Wos, AD Johnston… - Genome …, 2018 - genome.cshlp.org
DNA methylation patterns in the genome both reflect and help to mediate transcriptional
regulatory processes. The digital nature of DNA methylation, present or absent on each …

Genome-wide DNA methylation patterns reveal clinically relevant predictive and prognostic subtypes in human osteosarcoma

CE Lietz, ET Newman, AD Kelly, DH Xiang… - Communications …, 2022 - nature.com
Aberrant methylation of genomic DNA has been reported in many cancers. Specific DNA
methylation patterns have been shown to provide clinically useful prognostic information …

Differential epigenome-wide DNA methylation patterns in childhood obesity-associated asthma

D Rastogi, M Suzuki, JM Greally - Scientific reports, 2013 - nature.com
While DNA methylation plays a role in T-helper (Th) cell maturation, its potential
dysregulation in the non-atopic Th1-polarized systemic inflammation observed in obesity …

DNA methylation is developmentally regulated for genes essential for cardiogenesis

AA Chamberlain, M Lin, RL Lister… - Journal of the …, 2014 - Am Heart Assoc
Background DNA methylation is a major epigenetic mechanism altering gene expression in
development and disease. However, its role in the regulation of gene expression during …