From Root to Tips: Sporulation Evolution and Specialization in Bacillus subtilis and the Intestinal Pathogen Clostridioides difficile
P Ramos-Silva, M Serrano… - Molecular Biology and …, 2019 - academic.oup.com
Bacteria of the Firmicutes phylum are able to enter a developmental pathway that culminates
with the formation of highly resistant, dormant endospores. Endospores allow environmental …
with the formation of highly resistant, dormant endospores. Endospores allow environmental …
Computational analysis of sense-antisense chimeric transcripts reveals their potential regulatory features and the landscape of expression in human cells
Many human genes are transcribed from both strands and produce sense-antisense gene
pairs. Sense-antisense (SAS) chimeric transcripts are produced upon the coalescing of …
pairs. Sense-antisense (SAS) chimeric transcripts are produced upon the coalescing of …
Recent advances and future trends of riboswitches: attractive regulatory tools
JP Sinumvayo, C Zhao, P Tuyishime - World Journal of Microbiology and …, 2018 - Springer
Bacterial genomes contain a huge amount of different genes. These genes are
spatiotemporally expressed to accomplish some required functions within the organism …
spatiotemporally expressed to accomplish some required functions within the organism …
Unprecedented tunability of riboswitch structure and regulatory function by sub-millimolar variations in physiological Mg2+
K McCluskey, J Boudreault, P St-Pierre… - Nucleic acids …, 2019 - academic.oup.com
Riboswitches are cis-acting regulatory RNA biosensors that rival the efficiency of those
found in proteins. At the heart of their regulatory function is the formation of a highly specific …
found in proteins. At the heart of their regulatory function is the formation of a highly specific …
RiboD: a comprehensive database for prokaryotic riboswitches
S Mukherjee, S Das Mandal, N Gupta… - …, 2019 - academic.oup.com
Riboswitches are cis-regulatory non-coding genomic segments that control the expression
of downstream genes by undergoing conformational change upon ligand binding. We …
of downstream genes by undergoing conformational change upon ligand binding. We …
A computational approach for the identification of distant homologs of bacterial riboswitches based on inverse RNA folding
S Mukherjee, MD Retwitzer, SM Hubbell… - Briefings in …, 2023 - academic.oup.com
Riboswitches are conserved structural ribonucleic acid (RNA) sensors that are mainly found
to regulate a large number of genes/operons in bacteria. Presently,> 50 bacterial riboswitch …
to regulate a large number of genes/operons in bacteria. Presently,> 50 bacterial riboswitch …
Phylogenomic and comparative analysis of the distribution and regulatory patterns of TPP riboswitches in fungi
Riboswitches are metabolite or ion sensing cis-regulatory elements that regulate the
expression of the associated genes involved in biosynthesis or transport of the …
expression of the associated genes involved in biosynthesis or transport of the …
The Development of Bacteriophage Resistance in Vibrio alginolyticus Depends on a Complex Metabolic Adaptation Strategy
D Skliros, PG Kalatzis, C Kalloniati, F Komaitis… - Viruses, 2021 - mdpi.com
Lytic bacteriophages have been well documented to play a pivotal role in microbial ecology
due to their complex interactions with bacterial species, especially in aquatic habitats …
due to their complex interactions with bacterial species, especially in aquatic habitats …
Incipient sympatric speciation and evolution of soil bacteria revealed by metagenomic and structured non-coding RNAs analysis
Simple Summary The microevolutionary dynamics of soil bacteria under microclimatic
differences are largely unexplored in contrast to our improving knowledge of their vast …
differences are largely unexplored in contrast to our improving knowledge of their vast …
Ancestral state reconstruction of metabolic pathways across pangenome ensembles
FE Psomopoulos, J van Helden… - Microbial …, 2020 - microbiologyresearch.org
As genome sequencing efforts are unveiling the genetic diversity of the biosphere with an
unprecedented speed, there is a need to accurately describe the structural and functional …
unprecedented speed, there is a need to accurately describe the structural and functional …