Diverse clonal fates emerge upon drug treatment of homogeneous cancer cells

Y Goyal, GT Busch, M Pillai, J Li, RH Boe, EI Grody… - Nature, 2023 - nature.com
Even among genetically identical cancer cells, resistance to therapy frequently emerges
from a small subset of those cells,,,,,–. Molecular differences in rare individual cells in the …

Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro

B Zhang, A Srivastava, E Mimitou, T Stuart… - Nature …, 2022 - nature.com
Technologies that profile chromatin modifications at single-cell resolution offer enormous
promise for functional genomic characterization, but the sparsity of the measurements and …

ClampFISH 2.0 enables rapid, scalable amplified RNA detection in situ

I Dardani, BL Emert, Y Goyal, CL Jiang, A Kaur, J Lee… - Nature …, 2022 - nature.com
RNA labeling in situ has enormous potential to visualize transcripts and quantify their levels
in single cells, but it remains challenging to produce high levels of signal while also …

Cell type determination for cardiac differentiation occurs soon after seeding of human-induced pluripotent stem cells

CL Jiang, Y Goyal, N Jain, Q Wang, RE Truitt, AJ Coté… - Genome biology, 2022 - Springer
Background Cardiac differentiation of human-induced pluripotent stem (hiPS) cells
consistently produces a mixed population of cardiomyocytes and non-cardiac cell types …

Pre-determined diversity in resistant fates emerges from homogenous cells after anti-cancer drug treatment

Y Goyal, IP Dardani, GT Busch, B Emert, D Fingerman… - BioRxiv, 2021 - biorxiv.org
Even amongst genetically identical cancer cells, therapy resistance often only emerges from
a very small subset of those cells. Much effort has gone into uncovering the molecular …

Modeling diabetic endothelial dysfunction with patient‐specific induced pluripotent stem cells

R Gorashi, N Rivera‐Bolanos, C Dang… - Bioengineering & …, 2023 - Wiley Online Library
Diabetes is a known risk factor for various cardiovascular complications, mediated by
endothelial dysfunction. Despite the high prevalence of this metabolic disorder, there is a …

[HTML][HTML] Retrospective identification of intrinsic factors that mark pluripotency potential in rare somatic cells

N Jain, Y Goyal, MC Dunagin, CJ Cote, IA Mellis… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Pluripotency can be induced in somatic cells by the expression of the four “Yamanaka”
factors OCT4, KLF4, SOX2, and MYC. However, even in homogeneous conditions, usually …

Retrospective identification of cell-intrinsic factors that mark pluripotency potential in rare somatic cells

N Jain, Y Goyal, MC Dunagin, CJ Cote, IA Mellis… - Cell Systems, 2024 - cell.com
Pluripotency can be induced in somatic cells by the expression of OCT4, KLF4, SOX2, and
MYC. Usually only a rare subset of cells reprogram, and the molecular characteristics of this …

Prevalence of and gene regulatory constraints on transcriptional adaptation in single cells

IA Mellis, ME Melzer, N Bodkin, Y Goyal - Genome Biology, 2024 - Springer
Background Cells and tissues have a remarkable ability to adapt to genetic perturbations via
a variety of molecular mechanisms. Nonsense-induced transcriptional compensation, a form …

[HTML][HTML] A novel classification method for NSCLC based on the background interaction network and the edge-perturbation matrix

Y Tian, C Zhang, W Ma, A Huang, M Tian… - Aging (Albany …, 2022 - ncbi.nlm.nih.gov
The biological functional network of tumor tissues is relatively stable for a period of time and
under different conditions, so the impact of tumor heterogeneity is effectively avoided. Based …