The Landscape of long noncoding RNA classification

GS Laurent, C Wahlestedt, P Kapranov - Trends in genetics, 2015 - cell.com
Advances in the depth and quality of transcriptome sequencing have revealed many new
classes of long noncoding RNAs (lncRNAs). lncRNA classification has mushroomed to …

Structure and function of long noncoding RNAs in epigenetic regulation

TR Mercer, JS Mattick - Nature structural & molecular biology, 2013 - nature.com
Genomes of complex organisms encode an abundance and diversity of long noncoding
RNAs (lncRNAs) that are expressed throughout the cell and fulfill a wide variety of regulatory …

HRT Atlas v1. 0 database: redefining human and mouse housekeeping genes and candidate reference transcripts by mining massive RNA-seq datasets

BW Hounkpe, F Chenou, F de Lima… - Nucleic acids …, 2021 - academic.oup.com
Housekeeping (HK) genes are constitutively expressed genes that are required for the
maintenance of basic cellular functions. Despite their importance in the calibration of gene …

Classification and function of small open reading frames

JP Couso, P Patraquim - Nature reviews Molecular cell biology, 2017 - nature.com
Small open reading frames (smORFs) of 100 codons or fewer are usually—if arbitrarily—
excluded from proteome annotations. Despite this, the genomes of many metazoans …

Evolution and functions of long noncoding RNAs

CP Ponting, PL Oliver, W Reik - Cell, 2009 - cell.com
RNA is not only a messenger operating between DNA and protein. Transcription of
essentially the entire eukaryotic genome generates a myriad of non-protein-coding RNA …

Understanding biochemistry: structure and function of nucleic acids

S Minchin, J Lodge - Essays in biochemistry, 2019 - portlandpress.com
Nucleic acids, deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), carry genetic
information which is read in cells to make the RNA and proteins by which living things …

The transcriptional landscape of the yeast genome defined by RNA sequencing

U Nagalakshmi, Z Wang, K Waern, C Shou, D Raha… - Science, 2008 - science.org
The identification of untranslated regions, introns, and coding regions within an organism
remains challenging. We developed a quantitative sequencing-based method called RNA …

[图书][B] Genetics and philosophy: An introduction

P Griffiths, K Stotz - 2013 - books.google.com
In the past century, nearly all of the biological sciences have been directly affected by
discoveries and developments in genetics, a fast-evolving subject with important theoretical …

Genome-wide structure and organization of eukaryotic pre-initiation complexes

HS Rhee, BF Pugh - Nature, 2012 - nature.com
Transcription and regulation of genes originate from transcription pre-initiation complexes
(PICs). Their structural and positional organization across eukaryotic genomes is unknown …

Big data in biomedicine

FF Costa - Drug discovery today, 2014 - Elsevier
Highlights•Big data has affected several sectors including biomedicine, life sciences and
scientific research.•Genetics and genomics information are key enablers for predictive and …