Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques
Fields such as genomics and systems biology are built on the synergism between
computational and experimental techniques. This type of synergism is especially important …
computational and experimental techniques. This type of synergism is especially important …
Synthetic promoters: genetic control through cis engineering
M Venter - Trends in plant science, 2007 - cell.com
Technological advances in plant genetics integrated with systems biology and
bioinformatics has yielded a myriad of novel biological data and insights into plant …
bioinformatics has yielded a myriad of novel biological data and insights into plant …
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
S Gama-Castro, H Salgado… - Nucleic acids …, 2016 - academic.oup.com
Abstract RegulonDB (http://regulondb. ccg. unam. mx) is one of the most useful and
important resources on bacterial gene regulation, as it integrates the scattered scientific …
important resources on bacterial gene regulation, as it integrates the scattered scientific …
RSAT 2022: regulatory sequence analysis tools
W Santana-Garcia, JA Castro-Mondragon… - Nucleic Acids …, 2022 - academic.oup.com
Abstract RSAT (Regulatory Sequence Analysis Tools) enables the detection and the
analysis of cis-regulatory elements in genomic sequences. This software suite performs (i) …
analysis of cis-regulatory elements in genomic sequences. This software suite performs (i) …
Nuclear architecture dictates HIV-1 integration site selection
Long-standing evidence indicates that human immunodeficiency virus type 1 (HIV-1)
preferentially integrates into a subset of transcriptionally active genes of the host cell …
preferentially integrates into a subset of transcriptionally active genes of the host cell …
RSAT 2018: regulatory sequence analysis tools 20th anniversary
NTT Nguyen, B Contreras-Moreira… - Nucleic acids …, 2018 - academic.oup.com
Abstract RSAT (Regulatory Sequence Analysis Tools) is a suite of modular tools for the
detection and the analysis of cis-regulatory elements in genome sequences. Its main …
detection and the analysis of cis-regulatory elements in genome sequences. Its main …
Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2. 2, SRK2E/SnRK2. 6/OST1 and SRK2I/SnRK2. 3, involved in ABA signaling are essential for the control of …
K Nakashima, Y Fujita, N Kanamori… - Plant and Cell …, 2009 - academic.oup.com
ABA is an important phytohormone regulating various plant processes, including stress
tolerance, seed development and germination. SRK2D/SnRK2. 2, SRK2E/SnRK2. 6/OST1 …
tolerance, seed development and germination. SRK2D/SnRK2. 2, SRK2E/SnRK2. 6/OST1 …
[HTML][HTML] The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae
Quorum-sensing bacteria communicate with extracellular signal molecules called
autoinducers. This process allows community-wide synchronization of gene expression. A …
autoinducers. This process allows community-wide synchronization of gene expression. A …
RSAT 2015: regulatory sequence analysis tools
A Medina-Rivera, M Defrance, O Sand… - Nucleic acids …, 2015 - academic.oup.com
Abstract RSAT (Regulatory Sequence Analysis Tools) is a modular software suite for the
analysis of cis-regulatory elements in genome sequences. Its main applications are (i) motif …
analysis of cis-regulatory elements in genome sequences. Its main applications are (i) motif …
[HTML][HTML] Practical guidelines for the comprehensive analysis of ChIP-seq data
Mapping the chromosomal locations of transcription factors, nucleosomes, histone
modifications, chromatin remodeling enzymes, chaperones, and polymerases is one of the …
modifications, chromatin remodeling enzymes, chaperones, and polymerases is one of the …