Quo vadis, agent-based modelling tools?

AJ Daly, L De Visscher, JM Baetens… - … Modelling & Software, 2022 - Elsevier
Agent-based models (ABMs) are an increasingly popular choice for simulating large
systems of interacting components, and have been applied across a wide variety of natural …

Habitat fragmentation and species diversity in competitive communities

J Rybicki, N Abrego, O Ovaskainen - Ecology Letters, 2020 - Wiley Online Library
Habitat loss is one of the key drivers of the ongoing decline of biodiversity. However,
ecologists still argue about how fragmentation of habitat (independent of habitat loss) affects …

Exploring the limits of spatiotemporal and design-based index standardization under reduced survey coverage

S Yalcin, SC Anderson, PM Regular… - ICES Journal of …, 2023 - academic.oup.com
Indices of abundance derived from fisheries-independent surveys play a crucial role in
sustainable fisheries management. While design-based methods provide unbiased indices …

Regeneration strategies and forest resilience to changing fire regimes: Insights from a G oldilocks model

T Ramiadantsoa, Z Ratajczak, MG Turner - Ecology, 2023 - Wiley Online Library
Disturbances are ubiquitous in ecological systems, and species have evolved a range of
strategies to resist or rebound following disturbance. Understanding how the presence and …

Life in a droplet: microbial ecology in microscopic surface wetness

T Orevi, N Kashtan - Frontiers in Microbiology, 2021 - frontiersin.org
While many natural and artificial surfaces may appear dry, they are in fact covered by thin
liquid films and microdroplets invisible to the naked eye known as microscopic surface …

[HTML][HTML] Estimating the reproduction number, R0, from individual-based models of tree disease spread

LE Wadkin, J Holden, R Ettelaie, MJ Holmes, J Smith… - Ecological …, 2024 - Elsevier
Tree populations worldwide are facing an unprecedented threat from a variety of tree
diseases and invasive pests. Their spread, exacerbated by increasing globalisation and …

Consilience of methods for phylogenetic analysis of variance

DC Adams, ML Collyer - Evolution, 2022 - academic.oup.com
Simulation-based and permutation-based inferential methods are commonplace in
phylogenetic comparative methods, especially as evolutionary data have become more …

Grand challenge for habitat science: stage-structured responses, nonlocal drivers, and mechanistic associations among habitat variables affecting fishery productivity

JT Thorson, AJ Hermann, K Siwicke… - ICES Journal of …, 2021 - academic.oup.com
Spatial management has been adopted worldwide to mitigate habitat impacts while
achieving fisheries management objectives. However, there is little theory or practice for …

Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems

S Hamis, P Somervuo, JA Ågren, DS Tadele… - Journal of mathematical …, 2023 - Springer
Theoretical and applied cancer studies that use individual-based models (IBMs) have been
limited by the lack of a mathematical formulation that enables rigorous analysis of these …

Spatial metapopulation dynamics with local and global colonization

DH Le, TH Nguyen, F Takasu - Journal of Theoretical Biology, 2023 - Elsevier
We revisit a spatial metapopulation model on continuous space as a stochastic point pattern
dynamics. In the model, local patches as points are distributed with a certain spatial …