Cross-feeding in the gut microbiome: ecology and mechanisms
EJ Culp, AL Goodman - Cell host & microbe, 2023 - cell.com
Microbial communities are shaped by positive and negative interactions ranging from
competition to mutualism. In the context of the mammalian gut and its microbial inhabitants …
competition to mutualism. In the context of the mammalian gut and its microbial inhabitants …
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
Genome-scale stoichiometric modeling of metabolism has become a standard systems
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
biology tool for modeling cellular physiology and growth. Extensions of this approach are …
The lichens' microbiota, still a mystery?
M Grimm, M Grube, U Schiefelbein, D Zühlke… - Frontiers in …, 2021 - frontiersin.org
Lichens represent self-supporting symbioses, which occur in a wide range of terrestrial
habitats and which contribute significantly to mineral cycling and energy flow at a global …
habitats and which contribute significantly to mineral cycling and energy flow at a global …
Ecology and evolution of metabolic cross-feeding interactions in bacteria
Literature covered: early 2000s to late 2017 Bacteria frequently exchange metabolites with
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …
The social network of microorganisms—how auxotrophies shape complex communities
K Zengler, LS Zaramela - Nature Reviews Microbiology, 2018 - nature.com
Microorganisms engage in complex interactions with other organisms and their
environment. Recent studies have shown that these interactions are not limited to the …
environment. Recent studies have shown that these interactions are not limited to the …
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems
AR Pacheco, M Moel, D Segrè - Nature communications, 2019 - nature.com
Metabolic exchange mediates interactions among microbes, helping explain diversity in
microbial communities. As these interactions often involve a fitness cost, it is unclear how …
microbial communities. As these interactions often involve a fitness cost, it is unclear how …
Toxicity drives facilitation between 4 bacterial species
Competition between microbes is extremely common, with many investing in mechanisms to
harm other strains and species. Yet positive interactions between species have also been …
harm other strains and species. Yet positive interactions between species have also been …
Division of labor during biofilm matrix production
A Dragoš, H Kiesewalter, M Martin, CY Hsu… - Current Biology, 2018 - cell.com
Organisms as simple as bacteria can engage in complex collective actions, such as group
motility and fruiting body formation. Some of these actions involve a division of labor, where …
motility and fruiting body formation. Some of these actions involve a division of labor, where …
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
Recent advances focusing on the metabolic interactions within and between cellular
populations have emphasized the importance of microbial communities for human health …
populations have emphasized the importance of microbial communities for human health …
Resource availability modulates the cooperative and competitive nature of a microbial cross-feeding mutualism
Mutualisms between species play an important role in ecosystem function and stability.
However, in some environments, the competitive aspects of an interaction may dominate the …
However, in some environments, the competitive aspects of an interaction may dominate the …