Cross-feeding in the gut microbiome: ecology and mechanisms

EJ Culp, AL Goodman - Cell host & microbe, 2023 - cell.com
Microbial communities are shaped by positive and negative interactions ranging from
competition to mutualism. In the context of the mammalian gut and its microbial inhabitants …

A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)

I Dukovski, D Bajić, JM Chacón, M Quintin, JCC Vila… - Nature protocols, 2021 - nature.com
Genome-scale stoichiometric modeling of metabolism has become a standard systems
biology tool for modeling cellular physiology and growth. Extensions of this approach are …

The lichens' microbiota, still a mystery?

M Grimm, M Grube, U Schiefelbein, D Zühlke… - Frontiers in …, 2021 - frontiersin.org
Lichens represent self-supporting symbioses, which occur in a wide range of terrestrial
habitats and which contribute significantly to mineral cycling and energy flow at a global …

Ecology and evolution of metabolic cross-feeding interactions in bacteria

G D'Souza, S Shitut, D Preussger, G Yousif… - Natural product …, 2018 - pubs.rsc.org
Literature covered: early 2000s to late 2017 Bacteria frequently exchange metabolites with
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …

The social network of microorganisms—how auxotrophies shape complex communities

K Zengler, LS Zaramela - Nature Reviews Microbiology, 2018 - nature.com
Microorganisms engage in complex interactions with other organisms and their
environment. Recent studies have shown that these interactions are not limited to the …

Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems

AR Pacheco, M Moel, D Segrè - Nature communications, 2019 - nature.com
Metabolic exchange mediates interactions among microbes, helping explain diversity in
microbial communities. As these interactions often involve a fitness cost, it is unclear how …

Toxicity drives facilitation between 4 bacterial species

P Piccardi, B Vessman, S Mitri - Proceedings of the …, 2019 - National Acad Sciences
Competition between microbes is extremely common, with many investing in mechanisms to
harm other strains and species. Yet positive interactions between species have also been …

Division of labor during biofilm matrix production

A Dragoš, H Kiesewalter, M Martin, CY Hsu… - Current Biology, 2018 - cell.com
Organisms as simple as bacteria can engage in complex collective actions, such as group
motility and fruiting body formation. Some of these actions involve a division of labor, where …

BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities

E Bauer, J Zimmermann, F Baldini… - PLoS computational …, 2017 - journals.plos.org
Recent advances focusing on the metabolic interactions within and between cellular
populations have emphasized the importance of microbial communities for human health …

Resource availability modulates the cooperative and competitive nature of a microbial cross-feeding mutualism

TA Hoek, K Axelrod, T Biancalani, EA Yurtsev, J Liu… - PLoS …, 2016 - journals.plos.org
Mutualisms between species play an important role in ecosystem function and stability.
However, in some environments, the competitive aspects of an interaction may dominate the …