Information theoretic generalized Robinson–Foulds metrics for comparing phylogenetic trees
MR Smith - Bioinformatics, 2020 - academic.oup.com
Abstract Motivation The Robinson–Foulds (RF) metric is widely used by biologists, linguists
and chemists to quantify similarity between pairs of phylogenetic trees. The measure tallies …
and chemists to quantify similarity between pairs of phylogenetic trees. The measure tallies …
[HTML][HTML] Benchmarking of alignment-free sequence comparison methods
Background Alignment-free (AF) sequence comparison is attracting persistent interest driven
by data-intensive applications. Hence, many AF procedures have been proposed in recent …
by data-intensive applications. Hence, many AF procedures have been proposed in recent …
The phylogenetic relationships of neosuchian crocodiles and their implications for the convergent evolution of the longirostrine condition
Since their origin in the Late Triassic, crocodylomorphs have had a long history of
evolutionary change. Numerous studies examined their phylogeny, but none have …
evolutionary change. Numerous studies examined their phylogeny, but none have …
Fossils improve phylogenetic analyses of morphological characters
N Mongiardino Koch… - Proceedings of the …, 2021 - royalsocietypublishing.org
Fossils provide our only direct window into evolutionary events in the distant past.
Incorporating them into phylogenetic hypotheses of living clades can help time-calibrate …
Incorporating them into phylogenetic hypotheses of living clades can help time-calibrate …
[HTML][HTML] Craniodental morphology and phylogeny of marsupials
The current literature on marsupial phylogenetics includes numerous studies based on
analyses of morphological data with limited sampling of Recent and fossil taxa, and many …
analyses of morphological data with limited sampling of Recent and fossil taxa, and many …
Handling logical character dependency in phylogenetic inference: extensive performance testing of assumptions and solutions using simulated and empirical data
TR Simões, OV Vernygora, BAS de Medeiros… - Systematic …, 2023 - academic.oup.com
Logical character dependency is a major conceptual and methodological problem in
phylogenetic inference of morphological data sets, as it violates the assumption of character …
phylogenetic inference of morphological data sets, as it violates the assumption of character …
Reassessing the phylogeny and divergence times of sloths (Mammalia: Pilosa: Folivora), exploring alternative morphological partitioning and dating models
Phylogenetic relationships among sloths (Folivora) have been extensively studied in the
past few decades using maximum parsimony approaches. Recently, Bayesian phylogenetic …
past few decades using maximum parsimony approaches. Recently, Bayesian phylogenetic …
[HTML][HTML] Total evidence phylogeny of platyrrhine primates and a comparison of undated and tip-dating approaches
There have been multiple published phylogenetic analyses of platyrrhine primates (New
World monkeys) using both morphological and molecular data, but relatively few that have …
World monkeys) using both morphological and molecular data, but relatively few that have …
Death is on our side: paleontological data drastically modify phylogenetic hypotheses
Fossils are the only remaining evidence of the majority of species that have ever existed,
providing a direct window into events in evolutionary history that shaped the diversification …
providing a direct window into events in evolutionary history that shaped the diversification …
[HTML][HTML] Mesozoic Notocupes revealed as the sister group of Cupedidae (Coleoptera: Archostemata)
YD Li, E Tihelka, S Yamamoto, AF Newton… - Frontiers in ecology …, 2023 - frontiersin.org
Despite encompassing only about 50 extant species, beetles of the suborder Archostemata
have a rich fossil history, being known from the Permian and dominating coleopteran …
have a rich fossil history, being known from the Permian and dominating coleopteran …