Effects of molecular crowding on the structures, interactions, and functions of nucleic acids

S Nakano, D Miyoshi, N Sugimoto - Chemical reviews, 2014 - ACS Publications
Nucleic acids are excellent at recognizing complementary sequences through the formation
of Watson− Crick base pairs. Since the base pairing enables the highly selective …

[HTML][HTML] The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments

T Cremer, M Cremer, B Hübner, H Strickfaden… - FEBS letters, 2015 - Elsevier
Recent methodological advancements in microscopy and DNA sequencing-based methods
provide unprecedented new insights into the spatio-temporal relationships between …

Developments in preclinical cancer imaging: innovating the discovery of therapeutics

JRW Conway, NO Carragher, P Timpson - Nature reviews cancer, 2014 - nature.com
Integrating biological imaging into early stages of the drug discovery process can provide
invaluable readouts of drug activity within complex disease settings, such as cancer …

Fluorescence recovery after photobleaching in material and life sciences: putting theory into practice

N Lorén, J Hagman, JK Jonasson… - Quarterly reviews of …, 2015 - cambridge.org
Fluorescence recovery after photobleaching (FRAP) is a versatile tool for determining
diffusion and interaction/binding properties in biological and material sciences. An …

Nanoscale viscosity of cytoplasm is conserved in human cell lines

K Kwapiszewska, K Szczepański… - The journal of …, 2020 - ACS Publications
Metabolic reactions in living cells are limited by diffusion of reagents in the cytoplasm. Any
attempt to quantify the kinetics of biochemical reactions in the cytosol should be preceded by …

[HTML][HTML] Chemical labelling for visualizing native AMPA receptors in live neurons

S Wakayama, S Kiyonaka, I Arai, W Kakegawa… - Nature …, 2017 - nature.com
The location and number of neurotransmitter receptors are dynamically regulated at
postsynaptic sites. However, currently available methods for visualizing receptor trafficking …

[HTML][HTML] The effect of macromolecular crowding on mobility of biomolecules, association kinetics, and gene expression in living cells

M Tabaka, T Kalwarczyk, J Szymanski, S Hou… - Frontiers in …, 2014 - frontiersin.org
We discuss a quantitative influence of macromolecular crowding on biological processes:
motion, bimolecular reactions, and gene expression in prokaryotic and eukaryotic cells. We …

Quantifying transcription factor kinetics: at work or at play?

F Mueller, TJ Stasevich, D Mazza… - Critical reviews in …, 2013 - Taylor & Francis
Transcription factors (TFs) interact dynamically in vivo with chromatin binding sites. Here we
summarize and compare the four different techniques that are currently used to measure …

[HTML][HTML] On the equivalence of FCS and FRAP: simultaneous lipid membrane measurements

R Macháň, YH Foo, T Wohland - Biophysical journal, 2016 - cell.com
Fluorescence correlation spectroscopy (FCS) and fluorescence recovery after
photobleaching (FRAP) are widely used methods to determine diffusion coefficients …

[HTML][HTML] Diffusion and flow in complex liquids

K Makuch, R Hołyst, T Kalwarczyk, P Garstecki… - Soft Matter, 2020 - pubs.rsc.org
Thermal motion of particles and molecules in liquids underlies many chemical and
biological processes. Liquids, especially in biology, are complex due to structure at multiple …