Chloroplast genomes: diversity, evolution, and applications in genetic engineering

H Daniell, CS Lin, M Yu, WJ Chang - Genome biology, 2016 - Springer
Chloroplasts play a crucial role in sustaining life on earth. The availability of over 800
sequenced chloroplast genomes from a variety of land plants has enhanced our …

Plant DNA barcoding: from gene to genome

X Li, Y Yang, RJ Henry, M Rossetto, Y Wang… - Biological …, 2015 - Wiley Online Library
ABSTRACT DNA barcoding is currently a widely used and effective tool that enables rapid
and accurate identification of plant species; however, none of the available loci work across …

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

S Wicke, GM Schneeweiss, CW Depamphilis… - Plant molecular …, 2011 - Springer
This review bridges functional and evolutionary aspects of plastid chromosome architecture
in land plants and their putative ancestors. We provide an overview on the structure and …

Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

JB Yang, M Tang, HT Li, ZR Zhang, DZ Li - BMC evolutionary biology, 2013 - Springer
Background Cymbidium orchids, including some 50 species, are the famous flowers, and
they possess high commercial value in the floricultural industry. Furthermore, the values of …

The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)

M Yang, X Zhang, G Liu, Y Yin, K Chen, Q Yun, D Zhao… - PloS one, 2010 - journals.plos.org
Background Date palm (Phoenix dactylifera L.), a member of Arecaceae family, is one of the
three major economically important woody palms—the two other palms being oil palm and …

High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae)

YJ Zhang, PF Ma, DZ Li - PloS one, 2011 - journals.plos.org
Background Bambusoideae is the only subfamily that contains woody members in the grass
family, Poaceae. In phylogenetic analyses, Bambusoideae, Pooideae and Ehrhartoideae …

Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora)

X Nie, S Lv, Y Zhang, X Du, L Wang, SS Biradar, X Tan… - PloS one, 2012 - journals.plos.org
Background Crofton weed (Ageratina adenophora) is one of the most hazardous invasive
plant species, which causes serious economic losses and environmental damages …

Chloroplast genomic resources for phylogeny and DNA barcoding: a case study on Fritillaria

Y Bi, M Zhang, J Xue, R Dong, Y Du, X Zhang - Scientific reports, 2018 - nature.com
The genus Fritillaria comprises approximately 130 perennial herbaceous species. In the
Pharmacopoeia of the People's Republic of China, the bulbs of 11 Fritillaria species are …

Molecular evolution of chloroplast genomes of orchid species: insights into phylogenetic relationship and adaptive evolution

WL Dong, RN Wang, NY Zhang, WB Fan… - International Journal of …, 2018 - mdpi.com
Orchidaceae is the 3rd largest family of angiosperms, an evolved young branch of
monocotyledons. This family contains a number of economically-important horticulture and …

The plastid genomes of flowering plants

TA Ruhlman, RK Jansen - Chloroplast biotechnology: methods and …, 2014 - Springer
The plastid genome (plastome) has proved a valuable source of data for evaluating
evolutionary relationships among angiosperms. Through basic and applied approaches …