Mycobiome diversity: high-throughput sequencing and identification of fungi
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …
Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi
The global bio-diversity of fungi has been extensively investigated and their species number
has been estimated. Notably, the development of molecular phylogeny has revealed an …
has been estimated. Notably, the development of molecular phylogeny has revealed an …
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
J Peter, M De Chiara, A Friedrich, JX Yue, D Pflieger… - Nature, 2018 - nature.com
Large-scale population genomic surveys are essential to explore the phenotypic diversity of
natural populations. Here we report the whole-genome sequencing and phenotyping of …
natural populations. Here we report the whole-genome sequencing and phenotyping of …
A global genetic interaction network maps a wiring diagram of cellular function
INTRODUCTION Genetic interactions occur when mutations in two or more genes combine
to generate an unexpected phenotype. An extreme negative or synthetic lethal genetic …
to generate an unexpected phenotype. An extreme negative or synthetic lethal genetic …
Domestication and divergence of Saccharomyces cerevisiae beer yeasts
Whereas domestication of livestock, pets, and crops is well documented, it is still unclear to
what extent microbes associated with the production of food have also undergone human …
what extent microbes associated with the production of food have also undergone human …
Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease
Inflammatory bowel disease (IBD) is associated with risk variants in the human genome and
dysbiosis of the gut microbiome, though unifying principles for these findings remain largely …
dysbiosis of the gut microbiome, though unifying principles for these findings remain largely …
Inference of population splits and mixtures from genome-wide allele frequency data
J Pickrell, J Pritchard - Nature Precedings, 2012 - nature.com
Many aspects of the historical relationships between populations in a species are reflected
in genetic data. Inferring these relationships from genetic data, however, remains a …
in genetic data. Inferring these relationships from genetic data, however, remains a …
[HTML][HTML] A map of human genome variation from population scale sequencing
1000 Genomes Project Consortium - Nature, 2010 - ncbi.nlm.nih.gov
Abstract The 1000 Genomes Project aims to provide a deep characterisation of human
genome sequence variation as a foundation for investigating the relationship between …
genome sequence variation as a foundation for investigating the relationship between …
The Fungi: 1, 2, 3… 5.1 million species?
M Blackwell - American journal of botany, 2011 - Wiley Online Library
• Premise of the study: Fungi are major decomposers in certain ecosystems and essential
associates of many organisms. They provide enzymes and drugs and serve as experimental …
associates of many organisms. They provide enzymes and drugs and serve as experimental …
Genotype and SNP calling from next-generation sequencing data
R Nielsen, JS Paul, A Albrechtsen, YS Song - Nature Reviews Genetics, 2011 - nature.com
Meaningful analysis of next-generation sequencing (NGS) data, which are produced
extensively by genetics and genomics studies, relies crucially on the accurate calling of …
extensively by genetics and genomics studies, relies crucially on the accurate calling of …