Mycobiome diversity: high-throughput sequencing and identification of fungi

RH Nilsson, S Anslan, M Bahram… - Nature Reviews …, 2019 - nature.com
Fungi are major ecological players in both terrestrial and aquatic environments by cycling
organic matter and channelling nutrients across trophic levels. High-throughput sequencing …

Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi

B Wu, M Hussain, W Zhang, M Stadler, X Liu, M Xiang - Mycology, 2019 - Taylor & Francis
The global bio-diversity of fungi has been extensively investigated and their species number
has been estimated. Notably, the development of molecular phylogeny has revealed an …

Genome evolution across 1,011 Saccharomyces cerevisiae isolates

J Peter, M De Chiara, A Friedrich, JX Yue, D Pflieger… - Nature, 2018 - nature.com
Large-scale population genomic surveys are essential to explore the phenotypic diversity of
natural populations. Here we report the whole-genome sequencing and phenotyping of …

A global genetic interaction network maps a wiring diagram of cellular function

M Costanzo, B VanderSluis, EN Koch, A Baryshnikova… - Science, 2016 - science.org
INTRODUCTION Genetic interactions occur when mutations in two or more genes combine
to generate an unexpected phenotype. An extreme negative or synthetic lethal genetic …

Domestication and divergence of Saccharomyces cerevisiae beer yeasts

B Gallone, J Steensels, T Prahl, L Soriaga, V Saels… - Cell, 2016 - cell.com
Whereas domestication of livestock, pets, and crops is well documented, it is still unclear to
what extent microbes associated with the production of food have also undergone human …

Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease

H Chu, A Khosravi, IP Kusumawardhani, AHK Kwon… - Science, 2016 - science.org
Inflammatory bowel disease (IBD) is associated with risk variants in the human genome and
dysbiosis of the gut microbiome, though unifying principles for these findings remain largely …

Inference of population splits and mixtures from genome-wide allele frequency data

J Pickrell, J Pritchard - Nature Precedings, 2012 - nature.com
Many aspects of the historical relationships between populations in a species are reflected
in genetic data. Inferring these relationships from genetic data, however, remains a …

[HTML][HTML] A map of human genome variation from population scale sequencing

1000 Genomes Project Consortium - Nature, 2010 - ncbi.nlm.nih.gov
Abstract The 1000 Genomes Project aims to provide a deep characterisation of human
genome sequence variation as a foundation for investigating the relationship between …

The Fungi: 1, 2, 3… 5.1 million species?

M Blackwell - American journal of botany, 2011 - Wiley Online Library
• Premise of the study: Fungi are major decomposers in certain ecosystems and essential
associates of many organisms. They provide enzymes and drugs and serve as experimental …

Genotype and SNP calling from next-generation sequencing data

R Nielsen, JS Paul, A Albrechtsen, YS Song - Nature Reviews Genetics, 2011 - nature.com
Meaningful analysis of next-generation sequencing (NGS) data, which are produced
extensively by genetics and genomics studies, relies crucially on the accurate calling of …